Gene
| Gene Model ID | pfu_aug1.0_8.1_00055 |
|---|---|
| Locus | scaffold8.1 : 177933 ... 202815 : - |
| To GenomeBrowser | scaffold8.1:177933..202815 |
| Genes list of scaffold | scaffold8.1 |
| Synonym | pfu_aug2.0_981.1_04739 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8.1_00055.t1 | 3 | 1 | Thyroglobulin_1 | 46 | 55 | 1.3e-12 | 46.8 | 0.44 | 3300.0 | -2.5 |
| pfu_aug1.0_8.1_00055.t1 | 2 | 1 | SPARC_Ca_bdg | 61 | 87 | 9.0e-16 | 57.9 | 0.45 | 3400.0 | -2.0 |
| pfu_aug1.0_8.1_00055.t1 | 2 | 2 | SPARC_Ca_bdg | 171 | 287 | 9.0e-16 | 57.9 | 1.2e-19 | 9.0e-16 | 57.9 |
| pfu_aug1.0_8.1_00055.t1 | 3 | 2 | Thyroglobulin_1 | 221 | 229 | 1.3e-12 | 46.8 | 0.21 | 1600.0 | -1.5 |
| pfu_aug1.0_8.1_00055.t1 | 3 | 3 | Thyroglobulin_1 | 309 | 357 | 1.3e-12 | 46.8 | 1.8e-16 | 1.3e-12 | 46.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_8.1_00055.t1 | gi|47208358|emb|CAF94164.1| | unnamed protein product, partial [Tetraodon nigroviridis] | 3.0e-28 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_8.1_00055.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8.1_00055.t1 atgaaaaaggagaagaaaggacttaaacaccatatgagaaagggacttatggtagatgaaagagatttcctcaggtcaaa gtttccaagatacaagaaaggtcattgtttagaggattgtccagtgcactatgtatgtgtgacagaagatggggaacagt caaaatgtattaagaagaaagagctcaaggagagccgtctgctcttcaggaaacatatgcgtcagatgcgtagacaaaac aggaacgaaagacgtaggatgagatacgacagatttcagcgtagaaacagaggaggattcgaaaatttcatgagaaaacc tctgaaaaaaggaagcagaggttacaaaaaattgaggaagttacaggcacacatgaacggattcaatgtgaagcatgcta cattgtctaacaaaaaggttaaaccaatggatgaaagcaaagctctgctgaacaacttagctgatgtacagactctgctg gagaagaatgaagactcccaaggtcacccaatttgcacaccaaaaagtatgaatgatcttcgtacccgtatacagggatg gtttgtcgttatgcatgaagaacagagagaaaaacatcacagcatgaagcaccatgacaagagatccaagagatctgtcc ctgatgccaaactaggtgaatcaaaacagggtaaatgtaagtgtttgaagtcagtaatgtgggccttacaccactttgac aaggactcggaccatcatctcagcgagtcggaggtgttccccatacaaaaacaaaacaaagaggtctgccttaacccact tatgatgtcatgtaaccgtgacaatgatccacgactcagtaaagaagaatggtgctgctgtttcgccgaagacgagccac cttgtgccaagaaggttgagaaacttggacccatgccaatgattggagctttcatccccaagtgcacagccgagggatac tacgagagaatgcagtgtcactccagtaccggatactgctggtgtagtgatctgaacggtaacgaaatcaagggatcccg tctacatatgaagaacggacagcctgaatgcgaaaagaagtacaacgcccttggacaaccgaaaaaactgaaaggataca caattgtttga |
|
Protein
| Protein ID | pfu_aug1.0_8.1_00055.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8.1_00055.t1 MKKEKKGLKHHMRKGLMVDERDFLRSKFPRYKKGHCLEDCPVHYVCVTEDGEQSKCIKKKELKESRLLFRKHMRQMRRQN RNERRRMRYDRFQRRNRGGFENFMRKPLKKGSRGYKKLRKLQAHMNGFNVKHATLSNKKVKPMDESKALLNNLADVQTLL EKNEDSQGHPICTPKSMNDLRTRIQGWFVVMHEEQREKHHSMKHHDKRSKRSVPDAKLGESKQGKCKCLKSVMWALHHFD KDSDHHLSESEVFPIQKQNKEVCLNPLMMSCNRDNDPRLSKEEWCCCFAEDEPPCAKKVEKLGPMPMIGAFIPKCTAEGY YERMQCHSSTGYCWCSDLNGNEIKGSRLHMKNGQPECEKKYNALGQPKKLKGYTIV |
|