Gene
| Gene Model ID | pfu_aug1.0_8.1_00056 |
|---|---|
| Locus | scaffold8.1 : 227156 ... 235464 : + |
| To GenomeBrowser | scaffold8.1:227156..235464 |
| Genes list of scaffold | scaffold8.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8.1_00056.t1 | 3 | 1 | Herpes_UL52 | 4 | 15 | 4.9e-14 | 51.8 | 0.46 | 6900.0 | -3.2 |
| pfu_aug1.0_8.1_00056.t1 | 3 | 2 | Herpes_UL52 | 56 | 65 | 4.9e-14 | 51.8 | 0.54 | 8000.0 | -3.4 |
| pfu_aug1.0_8.1_00056.t1 | 3 | 3 | Herpes_UL52 | 102 | 158 | 4.9e-14 | 51.8 | 3.3e-18 | 4.9e-14 | 51.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_8.1_00056.t1 | gi|260823086|ref|XP_002604014.1| | hypothetical protein BRAFLDRAFT_71697 [Branchiostoma floridae] | 3.00004e-41 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_8.1_00056.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8.1_00056.t1 atggcattgacggttaatttgatgtatagattgactgcgaggaggaaaaatgtcaactctgaggagcagctttttctgga ctccttgattgcaaatattaagttttcgcccgacatgagggtgataacatttggagagagtggtacatctccacagtata gtagaaactcgcacagaaagaggaaaagtaatcaagataatcttggtggttaccattcgtcaccttaccctgaggtggat caccatattctatgtgagttagataagaggggacctaaagcctccatcaggcaatggacatacttctctaacggggagat gattctgtttgaaataggcggaaacagatggtgtgcaaatataggaagatgtcataaaagcaacaatataatgattatag cagacttgaagaaaagagtttactaccagaagtgccatgaccctgactgccgtgctgttaactttacatctgatgagatt ctcttaccagacaatgttttgccgtcttatttctgtgatgatgacgagtttttcgatggagaggaatttgacttacttaa cgcttctgatcaaatggaaaatctgtatcccccggcacagaatgaaactaaaatcccaaatgactatgaggatgaaatga tggacaatgatgacgatttacttaatgctgtggaaaatatggacagaactaataaatcttga |
|
Protein
| Protein ID | pfu_aug1.0_8.1_00056.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8.1_00056.t1 MALTVNLMYRLTARRKNVNSEEQLFLDSLIANIKFSPDMRVITFGESGTSPQYSRNSHRKRKSNQDNLGGYHSSPYPEVD HHILCELDKRGPKASIRQWTYFSNGEMILFEIGGNRWCANIGRCHKSNNIMIIADLKKRVYYQKCHDPDCRAVNFTSDEI LLPDNVLPSYFCDDDEFFDGEEFDLLNASDQMENLYPPAQNETKIPNDYEDEMMDNDDDLLNAVENMDRTNKS |
|