Gene
| Gene Model ID | pfu_aug1.0_801.1_22306 |
|---|---|
| Locus | scaffold801.1 : 37796 ... 40377 : + |
| To GenomeBrowser | scaffold801.1:37796..40377 |
| Genes list of scaffold | scaffold801.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_801.1_22306.t1 | 5 | 1 | zf-H2C2_2 | 3 | 11 | 7.1e-13 | 48.1 | 0.25 | 140.0 | 3.0 |
| pfu_aug1.0_801.1_22306.t1 | 4 | 1 | zf-H2C2_5 | 3 | 27 | 1.4e-10 | 40.7 | 6.0e-06 | 0.0033 | 17.5 |
| pfu_aug1.0_801.1_22306.t1 | 4 | 1 | zf-C2H2_4 | 3 | 25 | 1.1e-08 | 34.7 | 0.00034 | 0.19 | 12.1 |
| pfu_aug1.0_801.1_22306.t1 | 4 | 1 | zf-C2H2 | 3 | 25 | 6.6e-08 | 32.4 | 0.009 | 4.9 | 7.6 |
| pfu_aug1.0_801.1_22306.t1 | 5 | 2 | zf-H2C2_2 | 19 | 38 | 7.1e-13 | 48.1 | 2.6e-08 | 1.4e-05 | 25.1 |
| pfu_aug1.0_801.1_22306.t1 | 4 | 2 | zf-H2C2_5 | 31 | 37 | 1.4e-10 | 40.7 | 0.058 | 32.0 | 5.0 |
| pfu_aug1.0_801.1_22306.t1 | 4 | 2 | zf-C2H2_4 | 31 | 38 | 1.1e-08 | 34.7 | 0.04 | 22.0 | 5.6 |
| pfu_aug1.0_801.1_22306.t1 | 4 | 2 | zf-C2H2 | 31 | 39 | 6.6e-08 | 32.4 | 0.04 | 22.0 | 5.6 |
| pfu_aug1.0_801.1_22306.t1 | 5 | 3 | zf-H2C2_2 | 49 | 63 | 7.1e-13 | 48.1 | 0.056 | 31.0 | 5.1 |
| pfu_aug1.0_801.1_22306.t1 | 4 | 3 | zf-H2C2_5 | 52 | 76 | 1.4e-10 | 40.7 | 0.003 | 1.7 | 9.0 |
| pfu_aug1.0_801.1_22306.t1 | 4 | 3 | zf-C2H2_4 | 52 | 74 | 1.1e-08 | 34.7 | 0.00038 | 0.21 | 12.0 |
| pfu_aug1.0_801.1_22306.t1 | 4 | 3 | zf-C2H2 | 52 | 74 | 6.6e-08 | 32.4 | 0.00054 | 0.29 | 11.5 |
| pfu_aug1.0_801.1_22306.t1 | 5 | 4 | zf-H2C2_2 | 68 | 90 | 7.1e-13 | 48.1 | 5.1e-10 | 2.8e-07 | 30.5 |
| pfu_aug1.0_801.1_22306.t1 | 4 | 4 | zf-H2C2_5 | 80 | 101 | 1.4e-10 | 40.7 | 7.2e-08 | 3.9e-05 | 23.6 |
| pfu_aug1.0_801.1_22306.t1 | 4 | 4 | zf-C2H2_4 | 80 | 101 | 1.1e-08 | 34.7 | 1.4e-06 | 0.00076 | 19.6 |
| pfu_aug1.0_801.1_22306.t1 | 4 | 4 | zf-C2H2 | 80 | 103 | 6.6e-08 | 32.4 | 1.0e-07 | 5.5e-05 | 23.2 |
| pfu_aug1.0_801.1_22306.t1 | 5 | 5 | zf-H2C2_2 | 95 | 104 | 7.1e-13 | 48.1 | 0.11 | 59.0 | 4.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_801.1_22306.t1 | gi|260810939|ref|XP_002600180.1| | hypothetical protein BRAFLDRAFT_66688 [Branchiostoma floridae] | 2.0e-14 |
Transcript
| Transcript ID | pfu_aug1.0_801.1_22306.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_801.1_22306.t1 atgtcatatgcttgcgatgtttgtaattttaagtccttgtacaagaaaagcatcgttcgacacagacgtcgccatttcaa cgaaaaaccttttaagtgtccacattgttctcagcagatgaaggttatcggtttaaatcaccagcctatgtcatatgctt gcgatgtttgtcattttaagtccttttacaaggaaaacatcgtgcggcacagacgtcggcatttcaacgaaaaaccctat aagtgtccacattgtgactatgcttctacgagagcagatctcttaaaaaggcatataaaggggactcatgacttgagaaa ggaggaaacgccaaagaaatga |
|
Protein
| Protein ID | pfu_aug1.0_801.1_22306.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_801.1_22306.t1 MSYACDVCNFKSLYKKSIVRHRRRHFNEKPFKCPHCSQQMKVIGLNHQPMSYACDVCHFKSFYKENIVRHRRRHFNEKPY KCPHCDYASTRADLLKRHIKGTHDLRKEETPKK |
|