Gene
| Gene Model ID | pfu_aug1.0_802.1_00500 |
|---|---|
| Locus | scaffold802.1 : 118736 ... 122932 : + |
| To GenomeBrowser | scaffold802.1:118736..122932 |
| Genes list of scaffold | scaffold802.1 |
| Synonym | pfu_aug2.0_800.1_01144 |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | sox2 |
| Description | Simple NJ tree shows an affinity to sox2(human) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_802.1_00500.t1 | 5 | 1 | SOXp | 32 | 49 | 7.3e-12 | 45.7 | 0.76 | 3700.0 | -1.5 |
| pfu_aug1.0_802.1_00500.t1 | 5 | 2 | SOXp | 65 | 91 | 7.3e-12 | 45.7 | 0.8 | 3900.0 | -1.5 |
| pfu_aug1.0_802.1_00500.t1 | 1 | 1 | HMG_box_2 | 70 | 138 | 1.2e-11 | 44.7 | 7.2e-15 | 3.6e-11 | 43.2 |
| pfu_aug1.0_802.1_00500.t1 | 1 | 1 | HMG_box | 71 | 139 | 7.1e-27 | 93.4 | 2.8e-30 | 1.4e-26 | 92.5 |
| pfu_aug1.0_802.1_00500.t1 | 5 | 3 | SOXp | 140 | 197 | 7.3e-12 | 45.7 | 1.5e-15 | 7.3e-12 | 45.7 |
| pfu_aug1.0_802.1_00500.t1 | 5 | 4 | SOXp | 195 | 228 | 7.3e-12 | 45.7 | 0.78 | 3900.0 | -1.5 |
| pfu_aug1.0_802.1_00500.t1 | 5 | 5 | SOXp | 292 | 307 | 7.3e-12 | 45.7 | 0.33 | 1600.0 | -0.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_802.1_00500.t1 | gi|340025228|gb|AEK27011.1| | SRY-box containing protein 2 [Hyriopsis schlegelii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 2 |
| >Adult tissues | |
| Dshape | 2 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_802.1_00500.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_802.1_00500.t1 atggaagcggagatgcccaaggcccccgggcagacagctctacccccatccagccagggtatgcacgtcccagtgacggg accaggagggggaatgcatcaacagcaacattcaccaggatcgcaatctaatgtaagctcaaataataataataacaatt ctaatggacaagctatgaccgctgctcaaaaacaaaaagaattggaccgtgtgaaacggcctatgaacgctttcatggtg tggtcaagaggtcagaggcggaaaatggctcaagaaaacccgaaaatgcacaattctgaaatcagtaaaagacttggtgc agaatggaaattgctatcagaagcagagaaaagacctttcattgatgaggcaaaaagactgcgtgccattcacatgaaag aacacccagattataaatataggccgagaaggaagacgaaaaccctcatgaagaaggacaaatacctccctggaatgccc acgggcgctcccatccaagggagggatcccagcggtatgtaccccatgaacgggtatatgcccaacggatacccgatgat gcccgatcctaatgcctatcagcacatggccaatcaaatgtacggctacaacattcctacacaacctatggccaccggac agatgaccaccggttcctacatgaacggaagctcaagttacacaatgtccatgggaatgaatccgtattcgatgccaccg acgcaagttccaggagttaaacgggagcccaatcagcccagttccgcgggcccgcaaggcgggcaaccgggccggccggt aaatcccggagatttacgagaaatgatcagtatgtatttacccggagacgggtccgatcctcatagtgctcagagactcg ccatgcagcaggcccaggcgcaagcccattatcaaacacccacgtcggaaacagcggtgaacaatacagtgcccttgact catatgtaa |
|
Protein
| Protein ID | pfu_aug1.0_802.1_00500.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_802.1_00500.t1 MEAEMPKAPGQTALPPSSQGMHVPVTGPGGGMHQQQHSPGSQSNVSSNNNNNNSNGQAMTAAQKQKELDRVKRPMNAFMV WSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPFIDEAKRLRAIHMKEHPDYKYRPRRKTKTLMKKDKYLPGMP TGAPIQGRDPSGMYPMNGYMPNGYPMMPDPNAYQHMANQMYGYNIPTQPMATGQMTTGSYMNGSSSYTMSMGMNPYSMPP TQVPGVKREPNQPSSAGPQGGQPGRPVNPGDLREMISMYLPGDGSDPHSAQRLAMQQAQAQAHYQTPTSETAVNNTVPLT HM |
|