Gene
Gene Model ID | pfu_aug1.0_802.1_00500 |
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Locus | scaffold802.1 : 118736 ... 122932 : + |
To GenomeBrowser | scaffold802.1:118736..122932 |
Genes list of scaffold | scaffold802.1 |
Synonym | pfu_aug2.0_800.1_01144 |
Manual annotation
Study field | other developmental genes |
---|---|
Gene name | sox2 |
Description | Simple NJ tree shows an affinity to sox2(human) |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_802.1_00500.t1 | 5 | 1 | SOXp | 32 | 49 | 7.3e-12 | 45.7 | 0.76 | 3700.0 | -1.5 |
pfu_aug1.0_802.1_00500.t1 | 5 | 2 | SOXp | 65 | 91 | 7.3e-12 | 45.7 | 0.8 | 3900.0 | -1.5 |
pfu_aug1.0_802.1_00500.t1 | 1 | 1 | HMG_box_2 | 70 | 138 | 1.2e-11 | 44.7 | 7.2e-15 | 3.6e-11 | 43.2 |
pfu_aug1.0_802.1_00500.t1 | 1 | 1 | HMG_box | 71 | 139 | 7.1e-27 | 93.4 | 2.8e-30 | 1.4e-26 | 92.5 |
pfu_aug1.0_802.1_00500.t1 | 5 | 3 | SOXp | 140 | 197 | 7.3e-12 | 45.7 | 1.5e-15 | 7.3e-12 | 45.7 |
pfu_aug1.0_802.1_00500.t1 | 5 | 4 | SOXp | 195 | 228 | 7.3e-12 | 45.7 | 0.78 | 3900.0 | -1.5 |
pfu_aug1.0_802.1_00500.t1 | 5 | 5 | SOXp | 292 | 307 | 7.3e-12 | 45.7 | 0.33 | 1600.0 | -0.3 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_802.1_00500.t1 | gi|340025228|gb|AEK27011.1| | SRY-box containing protein 2 [Hyriopsis schlegelii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-4cell | 1 |
8-16cell | 1 |
egg-Dshape | 1 |
trochophore | 2 |
>Adult tissues | |
Dshape | 2 |
mantle | 1 |
Transcript
Transcript ID | pfu_aug1.0_802.1_00500.t1 |
---|---|
Definition | - |
>pfu_aug1.0_802.1_00500.t1 atggaagcggagatgcccaaggcccccgggcagacagctctacccccatccagccagggtatgcacgtcccagtgacggg accaggagggggaatgcatcaacagcaacattcaccaggatcgcaatctaatgtaagctcaaataataataataacaatt ctaatggacaagctatgaccgctgctcaaaaacaaaaagaattggaccgtgtgaaacggcctatgaacgctttcatggtg tggtcaagaggtcagaggcggaaaatggctcaagaaaacccgaaaatgcacaattctgaaatcagtaaaagacttggtgc agaatggaaattgctatcagaagcagagaaaagacctttcattgatgaggcaaaaagactgcgtgccattcacatgaaag aacacccagattataaatataggccgagaaggaagacgaaaaccctcatgaagaaggacaaatacctccctggaatgccc acgggcgctcccatccaagggagggatcccagcggtatgtaccccatgaacgggtatatgcccaacggatacccgatgat gcccgatcctaatgcctatcagcacatggccaatcaaatgtacggctacaacattcctacacaacctatggccaccggac agatgaccaccggttcctacatgaacggaagctcaagttacacaatgtccatgggaatgaatccgtattcgatgccaccg acgcaagttccaggagttaaacgggagcccaatcagcccagttccgcgggcccgcaaggcgggcaaccgggccggccggt aaatcccggagatttacgagaaatgatcagtatgtatttacccggagacgggtccgatcctcatagtgctcagagactcg ccatgcagcaggcccaggcgcaagcccattatcaaacacccacgtcggaaacagcggtgaacaatacagtgcccttgact catatgtaa |
Protein
Protein ID | pfu_aug1.0_802.1_00500.t1 |
---|---|
Definition | - |
>pfu_aug1.0_802.1_00500.t1 MEAEMPKAPGQTALPPSSQGMHVPVTGPGGGMHQQQHSPGSQSNVSSNNNNNNSNGQAMTAAQKQKELDRVKRPMNAFMV WSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPFIDEAKRLRAIHMKEHPDYKYRPRRKTKTLMKKDKYLPGMP TGAPIQGRDPSGMYPMNGYMPNGYPMMPDPNAYQHMANQMYGYNIPTQPMATGQMTTGSYMNGSSSYTMSMGMNPYSMPP TQVPGVKREPNQPSSAGPQGGQPGRPVNPGDLREMISMYLPGDGSDPHSAQRLAMQQAQAQAHYQTPTSETAVNNTVPLT HM |