Gene
Gene Model ID | pfu_aug1.0_8032.1_09686 |
---|---|
Locus | scaffold8032.1 : 4686 ... 19578 : + |
To GenomeBrowser | scaffold8032.1:4686..19578 |
Genes list of scaffold | scaffold8032.1 |
Synonym | pfu_aug2.0_1287.1_24841 |
Manual annotation
Study field | other |
---|---|
Gene name | tubulin polymerization promoting protein (TPPP) |
Description | BLASTP best hit to NCBI Accession XP532620 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_8032.1_09686.t1 | 1 | 1 | p25-alpha | 33 | 197 | 2.5e-20 | 73.3 | 1.1e-23 | 3.4e-20 | 72.8 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_8032.1_09686.t1 | gi|73977295|ref|XP_532620.2| | PREDICTED: tubulin polymerization-promoting protein family member 2 isoformX1 [Canis lupus familiaris] | 9.0e-18 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
adductorMuscle | 1 |
maleGonad | 1 |
mantle | 1 |
mantleEdge | 1 |
mantlePallium | 1 |
Transcript
Transcript ID | pfu_aug1.0_8032.1_09686.t1 |
---|---|
Definition | - |
>pfu_aug1.0_8032.1_09686.t1 atggcaacggcagacattactgatgaagatataaaacaagtatgcgaaaaattaaaagaatgcgttgtggctgcaaaagg gggcggtaaattgacagcagaagagaaaactcagttaaataacaaagcttgtaagaaaatggttactgatacaggtctcc caccaaaatgttcccagggctttgacattgctttcagtgccgtcaagaaatcgaaaccaggaatcgtcaacctttcaaaa catgacgaggttagggatctattggatagatgtgcaaaagaatatgcaacggtacaaaaagggaaagataaaaaaccggt tacagatgatgaaaaaagagagtacaaagtcaaactgtgtgacgctataaagaatgcaacgtttaatgcacaatcaaaag cagaacctacgaacaagaaggccagtgatgctacagcccgtctaacggatacgaaaaagtatactggcgcccacaaagag cggtttgacgcagagggcaaaggaaagggtgccgagggcagaacggacaaagctgacaacagtggatatgtaggaaatta caaaggtgcaggaacatatgacgctaaaaaataa |
Protein
Protein ID | pfu_aug1.0_8032.1_09686.t1 |
---|---|
Definition | - |
>pfu_aug1.0_8032.1_09686.t1 MATADITDEDIKQVCEKLKECVVAAKGGGKLTAEEKTQLNNKACKKMVTDTGLPPKCSQGFDIAFSAVKKSKPGIVNLSK HDEVRDLLDRCAKEYATVQKGKDKKPVTDDEKREYKVKLCDAIKNATFNAQSKAEPTNKKASDATARLTDTKKYTGAHKE RFDAEGKGKGAEGRTDKADNSGYVGNYKGAGTYDAKK |