Gene
| Gene Model ID | pfu_aug1.0_806.1_22307 |
|---|---|
| Locus | scaffold806.1 : 33526 ... 39201 : + |
| To GenomeBrowser | scaffold806.1:33526..39201 |
| Genes list of scaffold | scaffold806.1 |
| Synonym | pfu_aug2.0_74.1_13535 |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | six1/2 |
| Description | Highest BLAST hit toNM_001174113.1 Ovis aries SIX homeobox 1 (SIX1), mRNA |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_806.1_22307.t1 | 2 | 1 | Homeobox | 89 | 112 | 2.4e-15 | 55.8 | 0.22 | 800.0 | -0.3 |
| pfu_aug1.0_806.1_22307.t1 | 2 | 2 | Homeobox | 145 | 195 | 2.4e-15 | 55.8 | 2.4e-18 | 9.0e-15 | 54.0 |
| pfu_aug1.0_806.1_22307.t1 | 1 | 1 | Homeobox_KN | 160 | 193 | 2.9e-12 | 46.0 | 1.9e-15 | 6.9e-12 | 44.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_806.1_22307.t1 | gi|291230538|ref|XP_002735213.1| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_806.1_22307.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_806.1_22307.t1 atgttacatgataatggcgctcagactggtgtggggtcccccaaccctgccatgcttccgtccttcggcttcacccagga gcaggtcgcttgtgtgtgcgaggtacttcagcagggagggaacattgatagacttgccagatttctctggtcacttcccg cctgtgaacatttacacaaaaacgaaagtgttctcaaagccaaagcagtggtggcttttcacagaggaaacttcaaggaa ctttacaaaatcttagaaagcaataatttctcacctcacaatcatcctaaacttcaagcactatggctgaaagcgcacta tattgaggcagaaaaactccgtgggcgaccactcggagccgtgggcaagtacagagtcagacggaaattcccactaccaa gaacaatatgggacggtgaggaaacaagttactgtttcaaagaaaaatctcggacaatactcagggaatggtaccaacat aacccgtacccctcccctcgggaaaagagggagctggcagaagccaccggtctcaccaccacacaggtcagcaactggtt caagaatcggcgacaaagagatagggcagcggaacagaaagatagggataccacacacggtggtggcatgggacaggact taggatctcctcaaagtgacgacaaagatgatttgagcgatgacttacaagttccgccgcaaattcagacaaaaatggaa ccacaagacatgccaacaaaatttgaacctattgacataaatacatcacagtcgcattctttgtatacggacctccaaaa agcgatgccaagcggagggtttcctggaatgatgacagggggtggtcccctaacacacccgtccgtcaataatgggacga acgatcagccgccaccgaatgatctaatggacgagtaccacacgttatag |
|
Protein
| Protein ID | pfu_aug1.0_806.1_22307.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_806.1_22307.t1 MLHDNGAQTGVGSPNPAMLPSFGFTQEQVACVCEVLQQGGNIDRLARFLWSLPACEHLHKNESVLKAKAVVAFHRGNFKE LYKILESNNFSPHNHPKLQALWLKAHYIEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRTILREWYQH NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDRDTTHGGGMGQDLGSPQSDDKDDLSDDLQVPPQIQTKME PQDMPTKFEPIDINTSQSHSLYTDLQKAMPSGGFPGMMTGGGPLTHPSVNNGTNDQPPPNDLMDEYHTL |
|