Gene
| Gene Model ID | pfu_aug1.0_812.1_22323 |
|---|---|
| Locus | scaffold812.1 : 37405 ... 49345 : - |
| To GenomeBrowser | scaffold812.1:37405..49345 |
| Genes list of scaffold | scaffold812.1 |
| Synonym | pfu_aug2.0_876.1_21232 |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | Notch |
| Description | BLAST best hits to NCBI GU076071.1. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_812.1_22323.t1 | 7 | 1 | EGF | 18 | 45 | 2.3e-20 | 72.1 | 4.3e-07 | 0.00053 | 19.8 |
| pfu_aug1.0_812.1_22323.t1 | 7 | 2 | EGF | 55 | 85 | 2.3e-20 | 72.1 | 9.9e-09 | 1.2e-05 | 25.1 |
| pfu_aug1.0_812.1_22323.t1 | 7 | 3 | EGF | 93 | 125 | 2.3e-20 | 72.1 | 2.9e-05 | 0.036 | 14.0 |
| pfu_aug1.0_812.1_22323.t1 | 7 | 4 | EGF | 133 | 161 | 2.3e-20 | 72.1 | 4.9e-08 | 6.0e-05 | 22.9 |
| pfu_aug1.0_812.1_22323.t1 | 7 | 5 | EGF | 171 | 200 | 2.3e-20 | 72.1 | 1.2e-08 | 1.5e-05 | 24.8 |
| pfu_aug1.0_812.1_22323.t1 | 7 | 6 | EGF | 216 | 242 | 2.3e-20 | 72.1 | 1.1e-06 | 0.0013 | 18.5 |
| pfu_aug1.0_812.1_22323.t1 | 3 | 1 | Notch | 267 | 301 | 1.1e-23 | 83.2 | 1.6e-13 | 2.0e-10 | 40.7 |
| pfu_aug1.0_812.1_22323.t1 | 7 | 7 | EGF | 281 | 294 | 2.3e-20 | 72.1 | 0.52 | 640.0 | 0.4 |
| pfu_aug1.0_812.1_22323.t1 | 3 | 2 | Notch | 308 | 343 | 1.1e-23 | 83.2 | 3.2e-12 | 4.0e-09 | 36.5 |
| pfu_aug1.0_812.1_22323.t1 | 3 | 3 | Notch | 348 | 382 | 1.1e-23 | 83.2 | 4.8e-12 | 5.9e-09 | 36.0 |
| pfu_aug1.0_812.1_22323.t1 | 1 | 1 | NOD | 393 | 442 | 3.1e-17 | 61.3 | 4.5e-20 | 5.5e-17 | 60.5 |
| pfu_aug1.0_812.1_22323.t1 | 1 | 1 | Ank_2 | 516 | 592 | 2.3e-15 | 56.7 | 4.3e-18 | 5.4e-15 | 55.5 |
| pfu_aug1.0_812.1_22323.t1 | 2 | 1 | Ank_5 | 520 | 570 | 1.0e-10 | 41.4 | 7.5e-10 | 9.3e-07 | 28.9 |
| pfu_aug1.0_812.1_22323.t1 | 2 | 1 | Ank | 532 | 560 | 2.3e-14 | 52.3 | 2.3e-09 | 2.9e-06 | 26.8 |
| pfu_aug1.0_812.1_22323.t1 | 2 | 1 | Ank_3 | 532 | 555 | 1.0e-07 | 31.4 | 0.00018 | 0.22 | 11.8 |
| pfu_aug1.0_812.1_22323.t1 | 1 | 1 | Ank_4 | 532 | 583 | 5.0e-07 | 30.0 | 9.0e-10 | 1.1e-06 | 28.9 |
| pfu_aug1.0_812.1_22323.t1 | 2 | 2 | Ank_5 | 549 | 603 | 1.0e-10 | 41.4 | 1.6e-07 | 0.0002 | 21.4 |
| pfu_aug1.0_812.1_22323.t1 | 2 | 2 | Ank | 564 | 593 | 2.3e-14 | 52.3 | 4.1e-08 | 5.1e-05 | 22.8 |
| pfu_aug1.0_812.1_22323.t1 | 2 | 2 | Ank_3 | 564 | 588 | 1.0e-07 | 31.4 | 6.1e-06 | 0.0075 | 16.4 |
| pfu_aug1.0_812.1_22323.t1 | 1 | 1 | DUF3454 | 887 | 945 | 1.4e-17 | 63.5 | 1.2e-20 | 1.4e-17 | 63.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_812.1_22323.t1 | gi|268054227|gb|ACY92600.1| | notch receptor [Saccoglossus kowalevskii] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_812.1_22323.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_812.1_22323.t1 atgactaccactaatactggtgtagattgcgaacttaatgtagatgattgtcgtaacatgccgtgtgccaatggtggaac ttgtcatgatttggttaacgacttccactgctcgtgtccagctggcacacaaggaacactctgtgaatacaatgacaaag actgcttcgatggagcttgtttccatggtggaacttgtgttgataaggtgaatggctttgtctgtaattgtccaccaggc ttcgtaggacagcgctgtgaaggcgatgtcaacgagtgtttatcgagtccgtgtgatatacagggtacccatagctgtgt acaactcaccaacgattacagatgtgattgcaacattggatatacaggtcgtaactgctcccagcgtgtagacttctgta aagatcagccgtgtcagaacgggggagtatgtgctaacagtcctaatggtccattatgtacctgtccgtctgcctatact ggcgccctctgtgagatcaaaaagacgtcatgtaccagcgagccttgtcagaatgagggagtttgccagcccatggataa cggtggctatatctgtgtgtgtccgccgggtatagggggcgctaactgtactcaggatatcagagacgagtgtgccattc agcagaatacctgctataatggagggcgctgcttagatagacttgggaaattcgagtgttactgtggagcgggttacgtg ggtcagttttgtgaagtccagtcagatggtgctactcccggtatcggtcaacctgtactgaccactgtagagcccaccca tcagcagtgtccattctctacttgtggtgctaaagctggaaacggcatttgtgagaatgagtgcaacagtttcgagtgta agtttgatggaggtgactgttcgtttggtgttgtacagctttatcagcagtgctctagtccaaacctgtgctcaatggtg ttcggtgacgacacttgcaatcaagaatgtaacaccaaggaatgtctttacgatggatttgattgccgccaaaaccagaa agactgctacccctcagacagcattttctgcgacagactcttcggaaacggaaaatgtgatgagacatgtaatatcccag aatgcaattgggacggaacagattgtgcttccattcagcaaaatcagttttcgctttcggggactatgattgtttacgta ctggtttctccgcaagaatttttggagaaaagtcgaacatttttgagaaatattggactgttactcagagttgtggtaga tatcaagaaggatgaaaagggtcaaccgatggtgtttccatggcaactgggctctggttcaacatcaagggtcaaacgat ttatcccagattcctttaacgatttatcaaggagattccgtagagcttttgtcaatgaagatgctgataaaaacgtaaac gggactgaagtacatttagtcatggataacaaggattgtaaggcaactagcaaggactgtattgaaggcattgataaagc cactgaactgctgtccaactttcttctaaacggctttgatccaggtgttagagtagagaggatatcaagtaaaacagcat tgcattgggcagctgcggtcaataatagtcctgcagcccaggtgctactccaacatggggctaatagagatgctcaggat gcaaaggatgaaactccattgtttctggctgcaagggaaggaagctacgaaactgcaaagattctattggatcattacgc taatagagacataacagatcatatggatcgattacctcgcgatgtagcgcaagagagacttcatcaagatattctacatt tgttggatgaatatcgtataaatagcccagcaaatatggcacttaatggcatgccgacttcgcccagtcacttacaattc atgcaagcaaagtctaaacaaaaacgacggaaaaatggccaagcgatgccaatatctcctactggaaagacagtgaatgg tgtgcatccgaaaaaaccaaagagcaagaaaaaatctacaaaaagtagtgctacaaattcacatagtagtgaaggaagcc ctgttgaaacagtgtctccaggaaattcaatagaatccccgatgggatatgaaaggactcctcctcctccgtacgatatg tatgcaaacggaaatccatgctacagtttgcctcttatggacgaggtacaagtagctcagggttgtatggacgatcaaag agctatgttagcatcaggttatgatgcaagttctggaatggaccaatcaaaattaatttggcatcagggtgctctttcac aacctcaagcaataccatcaaacgcagcatcattaacaaccccatcgagcacaatggcttctaatgccagtccactcgga catggcaaaatgtctcctgcaaaacccggcaaaaatctgccgacatcaccaactcatattcaagcaatgcaacagagagc acgacaagagaggactcacgggagccctctaaaccgacagaatgaaacgtattcattccctacaaagactcatgttgaca atactatacctatgaccacattcagaccacaagacaattatcaagtgcaaaaagagcatacacaacccgagttcaatcaa gtgttacgtatgttcccggaataccccaccccgccctctcaacatagtatgggctctcccccacagacttatcctaatgc agcaatgttcgagcaccattacctcaccccgtctcctgactcccctggacagtggtcaagtagttcccctcattctgcaa actctaattggtcagagggtatccccagccctgaccaacccatgcagaggggagcaaataagcaaatgtatgtgtaa |
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Protein
| Protein ID | pfu_aug1.0_812.1_22323.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_812.1_22323.t1 MTTTNTGVDCELNVDDCRNMPCANGGTCHDLVNDFHCSCPAGTQGTLCEYNDKDCFDGACFHGGTCVDKVNGFVCNCPPG FVGQRCEGDVNECLSSPCDIQGTHSCVQLTNDYRCDCNIGYTGRNCSQRVDFCKDQPCQNGGVCANSPNGPLCTCPSAYT GALCEIKKTSCTSEPCQNEGVCQPMDNGGYICVCPPGIGGANCTQDIRDECAIQQNTCYNGGRCLDRLGKFECYCGAGYV GQFCEVQSDGATPGIGQPVLTTVEPTHQQCPFSTCGAKAGNGICENECNSFECKFDGGDCSFGVVQLYQQCSSPNLCSMV FGDDTCNQECNTKECLYDGFDCRQNQKDCYPSDSIFCDRLFGNGKCDETCNIPECNWDGTDCASIQQNQFSLSGTMIVYV LVSPQEFLEKSRTFLRNIGLLLRVVVDIKKDEKGQPMVFPWQLGSGSTSRVKRFIPDSFNDLSRRFRRAFVNEDADKNVN GTEVHLVMDNKDCKATSKDCIEGIDKATELLSNFLLNGFDPGVRVERISSKTALHWAAAVNNSPAAQVLLQHGANRDAQD AKDETPLFLAAREGSYETAKILLDHYANRDITDHMDRLPRDVAQERLHQDILHLLDEYRINSPANMALNGMPTSPSHLQF MQAKSKQKRRKNGQAMPISPTGKTVNGVHPKKPKSKKKSTKSSATNSHSSEGSPVETVSPGNSIESPMGYERTPPPPYDM YANGNPCYSLPLMDEVQVAQGCMDDQRAMLASGYDASSGMDQSKLIWHQGALSQPQAIPSNAASLTTPSSTMASNASPLG HGKMSPAKPGKNLPTSPTHIQAMQQRARQERTHGSPLNRQNETYSFPTKTHVDNTIPMTTFRPQDNYQVQKEHTQPEFNQ VLRMFPEYPTPPSQHSMGSPPQTYPNAAMFEHHYLTPSPDSPGQWSSSSPHSANSNWSEGIPSPDQPMQRGANKQMYV |
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