Gene
| Gene Model ID | pfu_aug1.0_8126.1_38709 |
|---|---|
| Locus | scaffold8126.1 : 1346 ... 15165 : - |
| To GenomeBrowser | scaffold8126.1:1346..15165 |
| Genes list of scaffold | scaffold8126.1 |
| Synonym | pfu_aug2.0_90.1_00227 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8126.1_38709.t1 | 3 | 1 | TRM | 26 | 107 | 3.0e-13 | 49.4 | 0.0066 | 98.0 | 1.6 |
| pfu_aug1.0_8126.1_38709.t1 | 3 | 2 | TRM | 131 | 180 | 3.0e-13 | 49.4 | 3.9e-08 | 0.00058 | 18.8 |
| pfu_aug1.0_8126.1_38709.t1 | 3 | 3 | TRM | 223 | 277 | 3.0e-13 | 49.4 | 4.3e-10 | 6.4e-06 | 25.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_8126.1_38709.t1 | gi|148222707|ref|NP_001091590.1| | TRMT1-like protein [Bos taurus] | 1.0e-22 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_8126.1_38709.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8126.1_38709.t1 atggacgcggacgccgacaccgttgattcagaatttgacattttccttccaaaggagactgttggaggcgccaaaggaca tgtcaaatttgacaaacgaatgaaaatcatacgggagactatactttccattttgagcgttgagctgaaagaaagatcca tttccaaagctccactaagatgtgcagatatcagtgatggctgtggtattgctggattgcagtggaaaaagctgtacaaa gaaaaaacccatgtcattgtaaacacatctgataatgtggaccaagtgcagaagacaagcaacttatctgatttgaaagc cacaccctatgagctggatgtgaatcaatctccatatcaaattcttcgatgtacatgccatgataaaacaccaggaaaaa ctgctgttatacttggaccaatgtggtacaggaatattttcaactcttccttcatctcaaatataatatccgatcagaac gaagtaaaaatgagtgaaaaacttaaaacagttcttagcacaatattggaggaatcgttatgccgtactgaagacgcatc aaaacattcctcggtgaagaatttggaatccaatagtaatggaccaccagaaaaaaagaaaaagttcaaccaagattgtt gcacatttgatgatctagttccacaattcttttacaatttacacagacggaagttcaaggaagtggaaataccaaaaagt ggtaagctgattacattattgaggagtgaaggacatagagccagcaggactcactttgatcctttaggaatcagaacaag tgcttctcttaaccaactttatgacattctactgaaatgttgtaaaaagaaatcataa |
|
Protein
| Protein ID | pfu_aug1.0_8126.1_38709.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8126.1_38709.t1 MDADADTVDSEFDIFLPKETVGGAKGHVKFDKRMKIIRETILSILSVELKERSISKAPLRCADISDGCGIAGLQWKKLYK EKTHVIVNTSDNVDQVQKTSNLSDLKATPYELDVNQSPYQILRCTCHDKTPGKTAVILGPMWYRNIFNSSFISNIISDQN EVKMSEKLKTVLSTILEESLCRTEDASKHSSVKNLESNSNGPPEKKKKFNQDCCTFDDLVPQFFYNLHRRKFKEVEIPKS GKLITLLRSEGHRASRTHFDPLGIRTSASLNQLYDILLKCCKKKS |
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