Gene
| Gene Model ID | pfu_aug1.0_8205.1_53126 |
|---|---|
| Locus | scaffold8205.1 : 35124 ... 38955 : - |
| To GenomeBrowser | scaffold8205.1:35124..38955 |
| Genes list of scaffold | scaffold8205.1 |
| Synonym | pfu_aug2.0_361.1_04058 |
Manual annotation
| Study field | structural proteins |
|---|---|
| Gene name | calponin |
| Description | Calponin partial sequence. BLASTP top hit to AB052656 (Mytilus galloprovincialis). |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8205.1_53126.t1 | 4 | 1 | Calponin | 59 | 83 | 1.8e-39 | 132.7 | 1.2e-15 | 1.7e-11 | 43.2 |
| pfu_aug1.0_8205.1_53126.t1 | 4 | 2 | Calponin | 99 | 123 | 1.8e-39 | 132.7 | 1.8e-17 | 2.6e-13 | 49.0 |
| pfu_aug1.0_8205.1_53126.t1 | 4 | 3 | Calponin | 139 | 163 | 1.8e-39 | 132.7 | 2.8e-12 | 4.1e-08 | 32.4 |
| pfu_aug1.0_8205.1_53126.t1 | 4 | 4 | Calponin | 185 | 202 | 1.8e-39 | 132.7 | 1.4e-05 | 0.21 | 10.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_8205.1_53126.t1 | gi|14422379|dbj|BAB60813.1| | calponin-like protein [Mytilus galloprovincialis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 2 |
| adductorMuscle | 1 |
| mantle | 2 |
| mantleEdge | 2 |
| mantlePallium | 1 |
| pearlSac | 2 |
Transcript
| Transcript ID | pfu_aug1.0_8205.1_53126.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8205.1_53126.t1 atgtatttgtacatatatgtgaaaatcttccttccatttcttacttcaaacacctacatttctcttaaacaggctcagag gaactcttttaatggagccacatgtggatctaggccggtggaagaaaaccgaagaaacttctcctacgaacaactgaagt cctcccatggaagtatcggtttacagtcaggaaccaacaaatttgactcccagaagggcatgacagccatgggggccgta cgtcacatatccgacatccgagcggataagttcgaccagacgtccgagggctgtatcaccctgcaggccggtaccaacaa gtttgccagccagaaaggaatgacggccattggagcggtgaggcatatctcggacatcagggcagatgattacgataagc agtccttgtgtgacatcaatcttcagtccggtactaacaaatttgacagtcagaagggaatgcgaggatttggcgcggtc cgccatatttctgacatcagagcagacgacttgtcacgtgaggcgtgcagtacgatctcaccacagattatgtacaccgg aggagacagtcaggcgggaatgagaggatttggcgccgcccgtcacgtttcagatatcaaagtacccgaccttgctgagg agatggcacaaaagactggatataaacctgcaaggcgcgtggattctggcgctaatctggcagaggctcagccggaagag gaagcagaagataattag |
|
Protein
| Protein ID | pfu_aug1.0_8205.1_53126.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8205.1_53126.t1 MYLYIYVKIFLPFLTSNTYISLKQAQRNSFNGATCGSRPVEENRRNFSYEQLKSSHGSIGLQSGTNKFDSQKGMTAMGAV RHISDIRADKFDQTSEGCITLQAGTNKFASQKGMTAIGAVRHISDIRADDYDKQSLCDINLQSGTNKFDSQKGMRGFGAV RHISDIRADDLSREACSTISPQIMYTGGDSQAGMRGFGAARHVSDIKVPDLAEEMAQKTGYKPARRVDSGANLAEAQPEE EAEDN |
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