Gene
| Gene Model ID | pfu_aug1.0_8238.1_17260 |
|---|---|
| Locus | scaffold8238.1 : 15508 ... 28172 : - |
| To GenomeBrowser | scaffold8238.1:15508..28172 |
| Genes list of scaffold | scaffold8238.1 |
| Synonym | pfu_aug2.0_1536.1_21678 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | nacrein B |
| Description | NCBI BLASTP hit to ADY69618 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8238.1_17260.t1 | 2 | 1 | Carb_anhydrase | 29 | 42 | 1.6e-16 | 60.0 | 0.3 | 2200.0 | -2.7 |
| pfu_aug1.0_8238.1_17260.t1 | 2 | 2 | Carb_anhydrase | 186 | 258 | 1.6e-16 | 60.0 | 5.1e-20 | 3.8e-16 | 58.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_8238.1_17260.t1 | gi|329755383|gb|AEC03970.1| | nacrein A1 [Pinctada margaritifera] | 4.99983e-42 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_8238.1_17260.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8238.1_17260.t1 gcacatgtggttttctacgaagatgacgatccatccgggcaacaagtgtcgagagtgaacattggtggtcgctatggata cagtgacgccttcattgttataggcgtctttcttgaggtagatgacgatggttttggcgatgagccagatgatgacgaat gtgaggaaattttgagtggagatgactataacaaatacaagaagaatggcaaaaagggaaaatatgagagaagaaacaca aaggataaatcaaaacttcggcagaaattcagaaacaattatgaagacgatgacgatgacgacggcgacgattataatag tagtagaagtagtagtagtagtagtagtagcagcagtgaaagtcaagaaaatggttatttggacaacaataattatggtt ggaggtggtggaataagtatggagatcggggtcgacgggggcgttgcaaagtccgaaaggcgcgaagactaagtcgtata ctggagtgtgcgtaccgaaataagaaagtccatgacttcaggcacctagatgataatgaggtattggagatagacatcag acccgaggatgtcctaccaccccctaaccacagacaatattacacttacgaagggtccctgaccacccctccgtgtaatg agacagtccattggatagtaatgaaatgtcacgtgaaagtatccgaacgagtgctccatgccttacgtaacgtggaagga taccctgatggtaaaacgctgagtgtattcggtaccaggagaccaacacaatataatgaaaatccagtttataaaaactt ttggaagtga |
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Protein
| Protein ID | pfu_aug1.0_8238.1_17260.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8238.1_17260.t1 AHVVFYEDDDPSGQQVSRVNIGGRYGYSDAFIVIGVFLEVDDDGFGDEPDDDECEEILSGDDYNKYKKNGKKGKYERRNT KDKSKLRQKFRNNYEDDDDDDGDDYNSSRSSSSSSSSSSESQENGYLDNNNYGWRWWNKYGDRGRRGRCKVRKARRLSRI LECAYRNKKVHDFRHLDDNEVLEIDIRPEDVLPPPNHRQYYTYEGSLTTPPCNETVHWIVMKCHVKVSERVLHALRNVEG YPDGKTLSVFGTRRPTQYNENPVYKNFWK |
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