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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_826.1_29434
Locus scaffold826.1 : 51216 ... 63189 : +
To GenomeBrowser scaffold826.1:51216..63189
Genes list of scaffold scaffold826.1
Synonym pfu_aug2.0_8.1_26613

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_826.1_29434.t1 1 1 Zona_pellucida 31 198 2.2e-07 30.6 1.9e-11 2.8e-07 30.2

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
>Adult tissues
mantle 1

Transcript
Transcript IDpfu_aug1.0_826.1_29434.t1
Definition-
>pfu_aug1.0_826.1_29434.t1
atgaacgtgcaacatttgacgaccatggtggcaatctttcagtcagatactatgacgcttgtaatgagaacgtttcagaa
tcctgctctggacacagcgtctgatcgtttctacgtcatcacatgtgaaaaatctcaactgacatcgatgtggacggagt
cttctgcatttggtgtcggggatgtcgacacagttcctctgaatcacaccagaagtgtaacattcttgatgctaaatgca
ggaacaggcgagttacaaagcacctacagagttggggaaagtgtttatcttgaatttcaactagaatttaaatcagcaat
tgagggaatcgacttcatcggagcgtcacttgtaaacgtcatggtttcttcttcttccaccttcactacatcatttagat
accttgcggatagcaatggctgtccagttgaccatcctgaagatgctcttcaaataacttctgggtttatcgtaaatact
acagcgcttgtatctccctttgtggctcgtacgtcaatctttgaggtagcgcggtttgcagacggaccacgactgaacat
ccgagctgatatacagtactgcacgcgttccacagatcgctgctttgaggtgtga

Protein
Protein IDpfu_aug1.0_826.1_29434.t1
Definition-
>pfu_aug1.0_826.1_29434.t1
MNVQHLTTMVAIFQSDTMTLVMRTFQNPALDTASDRFYVITCEKSQLTSMWTESSAFGVGDVDTVPLNHTRSVTFLMLNA
GTGELQSTYRVGESVYLEFQLEFKSAIEGIDFIGASLVNVMVSSSSTFTTSFRYLADSNGCPVDHPEDALQITSGFIVNT
TALVSPFVARTSIFEVARFADGPRLNIRADIQYCTRSTDRCFEV

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