Gene
| Gene Model ID | pfu_aug1.0_83.1_50612 |
|---|---|
| Locus | scaffold83.1 : 21069 ... 26195 : - |
| To GenomeBrowser | scaffold83.1:21069..26195 |
| Genes list of scaffold | scaffold83.1 |
| Synonym | pfu_aug2.0_7377.1_26220 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_83.1_50612.t1 | 3 | 1 | EF-hand_1 | 37 | 46 | 2.5e-13 | 48.2 | 0.16 | 200.0 | 1.6 |
| pfu_aug1.0_83.1_50612.t1 | 3 | 2 | EF-hand_1 | 59 | 85 | 2.5e-13 | 48.2 | 7.1e-07 | 0.00088 | 18.4 |
| pfu_aug1.0_83.1_50612.t1 | 2 | 1 | EF-hand_6 | 59 | 85 | 2.9e-10 | 39.1 | 5.7e-08 | 7.0e-05 | 22.3 |
| pfu_aug1.0_83.1_50612.t1 | 1 | 1 | EF-hand_7 | 60 | 120 | 1.1e-11 | 44.6 | 1.5e-14 | 1.8e-11 | 44.0 |
| pfu_aug1.0_83.1_50612.t1 | 2 | 1 | EF-hand_5 | 64 | 82 | 7.1e-09 | 34.6 | 3.1e-05 | 0.038 | 13.3 |
| pfu_aug1.0_83.1_50612.t1 | 1 | 1 | EF-hand_8 | 72 | 121 | 4.9e-09 | 35.6 | 3.9e-12 | 4.9e-09 | 35.6 |
| pfu_aug1.0_83.1_50612.t1 | 3 | 3 | EF-hand_1 | 95 | 120 | 2.5e-13 | 48.2 | 3.9e-11 | 4.8e-08 | 31.7 |
| pfu_aug1.0_83.1_50612.t1 | 2 | 2 | EF-hand_5 | 97 | 119 | 7.1e-09 | 34.6 | 1.8e-08 | 2.2e-05 | 23.5 |
| pfu_aug1.0_83.1_50612.t1 | 2 | 2 | EF-hand_6 | 101 | 121 | 2.9e-10 | 39.1 | 3.6e-06 | 0.0045 | 16.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_83.1_50612.t1 | gi|260841586|ref|XP_002613993.1| | hypothetical protein BRAFLDRAFT_118451 [Branchiostoma floridae] | 3.0e-29 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| 8-16cell | 3 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 2 |
| maleGonad | 2 |
Transcript
| Transcript ID | pfu_aug1.0_83.1_50612.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_83.1_50612.t1 atgcctaaaaagaaaggaaagtcgaaaaagggtggaaaaagtaagaaaggtggaaaatccaagtccctgaagaaggaaaa tgagaatccagatccaatagcgccccatatagaattcacagaatttctggaagtggtgatagacagacagggggatgcca gggatatgtatgatgagatattaaagggttttactatgtttgattatgataaatcaggttcaattactatagacaatcta aagaaggcgtgtgaagaagcagggataaaattcactcagcgagagctggaagaaatgatcgaggaagctgatatcaatgg tgacgggaaaatagaccaatcagaattcatcagaatcatgttacagacgaatttgttttga |
|
Protein
| Protein ID | pfu_aug1.0_83.1_50612.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_83.1_50612.t1 MPKKKGKSKKGGKSKKGGKSKSLKKENENPDPIAPHIEFTEFLEVVIDRQGDARDMYDEILKGFTMFDYDKSGSITIDNL KKACEEAGIKFTQRELEEMIEEADINGDGKIDQSEFIRIMLQTNLF |
|