Gene
Gene Model ID | pfu_aug1.0_83.1_50613 |
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Locus | scaffold83.1 : 28076 ... 36228 : + |
To GenomeBrowser | scaffold83.1:28076..36228 |
Genes list of scaffold | scaffold83.1 |
Synonym | pfu_aug2.0_7377.1_26221 |
Manual annotation
Study field | Transcription Factors |
---|---|
Gene name | Pfu-Hairy_orange domain containing 1 |
Description | Best hit to CAG03204 unnamed protein product [Tetraodon nigroviridis] with 4e-05 by BLASTP search against NCBI nr. We could not retrieve a bHLH domain, and therefore this gene is not included in the bHLH annotation paper. |
mRNA evidence |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-4cell | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_83.1_50613.t1 |
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Definition | - |
>pfu_aug1.0_83.1_50613.t1 atggagaaagcagacatattggaaatgacagtgaaacatctgaaagaaagaaattcgacttcgacctcagatgtccttga ccgatatagagcgggatatatggcttgtttgcagacaacactggattaccttggtaaccatagtgatctatcgaaagatg tccagatgaaccttgcacaagcaatttcttgtagaatgctccaatacaaaaaatgtgaagtgattccgagcaaatcacca ttggaaacaaaccgacctagagtgtattccgaaggatcttacaacaatgcgttgcttagcaaccaaagaactttgaccca tgatgcgacgaatcgtatccacggttaccaaaatacagttcgatccgcttcacattttgaaacctcaaactatggagtta accacgagacaaatttaccaggaagcagaagagacagacgttcgtccagtgtaagctttgcgcgtgcgtcaccagacttc ctctctcaaaatgaagattctggttttgcagacgataatgtattttgcgactttaataatcagtgttttaatacatcacc ggcatacagtacaaattcaaacggttcagcatcaagtgacaatgtattctttcaattctccaataatgtttcacggactg atagttgttcgtccgaggtacatagcattttccatgttgcaggcagtagcgccatctgctatgaatgtacgtcattggac gccacctggtgtggagaatattttgacgacgatgacgtcacactgtatcacaacagtatcgttaactgctctggaacatt ctgtatgaagcttatcggccactcacaggaaaacgaagatttttacgttcgaacttgcgatgtaaccaacggtcgacacg gcacatgcgttaccggaagtcacgtgctaggaattccaacgagtactgtgtgtgtttgcaaaggtgatcgatgtaatacg ggagcgatgcttggaactttcagttttgttttttactgtttgtcttttcaacgtatattggtccgcacaagaacaatatt gtag |
Protein
Protein ID | pfu_aug1.0_83.1_50613.t1 |
---|---|
Definition | - |
>pfu_aug1.0_83.1_50613.t1 MEKADILEMTVKHLKERNSTSTSDVLDRYRAGYMACLQTTLDYLGNHSDLSKDVQMNLAQAISCRMLQYKKCEVIPSKSP LETNRPRVYSEGSYNNALLSNQRTLTHDATNRIHGYQNTVRSASHFETSNYGVNHETNLPGSRRDRRSSSVSFARASPDF LSQNEDSGFADDNVFCDFNNQCFNTSPAYSTNSNGSASSDNVFFQFSNNVSRTDSCSSEVHSIFHVAGSSAICYECTSLD ATWCGEYFDDDDVTLYHNSIVNCSGTFCMKLIGHSQENEDFYVRTCDVTNGRHGTCVTGSHVLGIPTSTVCVCKGDRCNT GAMLGTFSFVFYCLSFQRILVRTRTIL |