Gene
| Gene Model ID | pfu_aug1.0_83.1_50613 |
|---|---|
| Locus | scaffold83.1 : 28076 ... 36228 : + |
| To GenomeBrowser | scaffold83.1:28076..36228 |
| Genes list of scaffold | scaffold83.1 |
| Synonym | pfu_aug2.0_7377.1_26221 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-Hairy_orange domain containing 1 |
| Description | Best hit to CAG03204 unnamed protein product [Tetraodon nigroviridis] with 4e-05 by BLASTP search against NCBI nr. We could not retrieve a bHLH domain, and therefore this gene is not included in the bHLH annotation paper. |
| mRNA evidence |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_83.1_50613.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_83.1_50613.t1 atggagaaagcagacatattggaaatgacagtgaaacatctgaaagaaagaaattcgacttcgacctcagatgtccttga ccgatatagagcgggatatatggcttgtttgcagacaacactggattaccttggtaaccatagtgatctatcgaaagatg tccagatgaaccttgcacaagcaatttcttgtagaatgctccaatacaaaaaatgtgaagtgattccgagcaaatcacca ttggaaacaaaccgacctagagtgtattccgaaggatcttacaacaatgcgttgcttagcaaccaaagaactttgaccca tgatgcgacgaatcgtatccacggttaccaaaatacagttcgatccgcttcacattttgaaacctcaaactatggagtta accacgagacaaatttaccaggaagcagaagagacagacgttcgtccagtgtaagctttgcgcgtgcgtcaccagacttc ctctctcaaaatgaagattctggttttgcagacgataatgtattttgcgactttaataatcagtgttttaatacatcacc ggcatacagtacaaattcaaacggttcagcatcaagtgacaatgtattctttcaattctccaataatgtttcacggactg atagttgttcgtccgaggtacatagcattttccatgttgcaggcagtagcgccatctgctatgaatgtacgtcattggac gccacctggtgtggagaatattttgacgacgatgacgtcacactgtatcacaacagtatcgttaactgctctggaacatt ctgtatgaagcttatcggccactcacaggaaaacgaagatttttacgttcgaacttgcgatgtaaccaacggtcgacacg gcacatgcgttaccggaagtcacgtgctaggaattccaacgagtactgtgtgtgtttgcaaaggtgatcgatgtaatacg ggagcgatgcttggaactttcagttttgttttttactgtttgtcttttcaacgtatattggtccgcacaagaacaatatt gtag |
|
Protein
| Protein ID | pfu_aug1.0_83.1_50613.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_83.1_50613.t1 MEKADILEMTVKHLKERNSTSTSDVLDRYRAGYMACLQTTLDYLGNHSDLSKDVQMNLAQAISCRMLQYKKCEVIPSKSP LETNRPRVYSEGSYNNALLSNQRTLTHDATNRIHGYQNTVRSASHFETSNYGVNHETNLPGSRRDRRSSSVSFARASPDF LSQNEDSGFADDNVFCDFNNQCFNTSPAYSTNSNGSASSDNVFFQFSNNVSRTDSCSSEVHSIFHVAGSSAICYECTSLD ATWCGEYFDDDDVTLYHNSIVNCSGTFCMKLIGHSQENEDFYVRTCDVTNGRHGTCVTGSHVLGIPTSTVCVCKGDRCNT GAMLGTFSFVFYCLSFQRILVRTRTIL |
|