Gene
| Gene Model ID | pfu_aug1.0_830.1_15248 |
|---|---|
| Locus | scaffold830.1 : 16100 ... 30875 : - |
| To GenomeBrowser | scaffold830.1:16100..30875 |
| Genes list of scaffold | scaffold830.1 |
| Synonym | pfu_aug2.0_397.1_23971 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_830.1_15248.t1 | 1 | 1 | IMS | 15 | 127 | 3.7e-15 | 56.0 | 1.8e-18 | 8.8e-15 | 54.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_830.1_15248.t1 | gi|260803774|ref|XP_002596764.1| | hypothetical protein BRAFLDRAFT_211672 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_830.1_15248.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_830.1_15248.t1 atgctgtgtaatgccttgatgcaaatagaaacaatacctttacacaaggtagagcgtgccagtattgatgaagcatacat agaccttacagaggaagttaagaagaggataacaaagctatcaggggatagagtcctggtacaacaactacaaaatacct ttgttgtaggccacggagatgataaaagtggagaaaacagagaggagggagttgaccagtggctgaccacagcctttgag gaggaggtctcagacaatgatataagactggcagtgggggcactgatatcagaggaaatgagggctgcagtgtacgcaga aactggattcagatgctctgctgggattgcacataataagatgcttgccaaattatcatgtggcctacacaagcctaaca agcagactgtcctgcctcacgcatcagttcctatactgtacagtactctacccatcaagaaaatacgtaacttaggtggg aagtttggacagtcattggtagaacaactcggcgtagaaaacatgggtgatttgtgtaaattttctttgaaggagttaca ggcatgctgtggagacaagtctggaacatcagatgaagatttagaaggttcaatcagctctccttcaaaaagagtgcagt ctatgagcgaagacattattgaatatgaagaaccagagccaataccaggaacgtcttataatgaagaaataactgctcga agactaagtgagatgcatgcaaccgaggaaggaacatctagaagacctagtgagttgtatgacatagatcctaattctgt ggattcagatgtttttgacgcgcttccattagatatacaaaatgaaattaaggcagaaatgggacgtcaaaatggattga aatctccaattaaaacttctgctctacctcaagaaaatggtggaaactgtgatatacaacatgtagagaatgcagcaact tatggtgatctgtttacctcttgtgaaaaatgtgggaaaaaactacaagtgtgggaaatggaagagcatatggactttca ctttgctcaagagctccaacaagagttgagacagagtgacgcacccttgggtacgtcgaacaggagcgaaaacaatagac agcctgtgggagcaggtacaaaaagaaaacttagtgccgctacttcaacaagaggacgaaagaaacaaaagccaaatgtt gataaatgtcaaagaatggataattttataattaaaagataa |
|
Protein
| Protein ID | pfu_aug1.0_830.1_15248.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_830.1_15248.t1 MLCNALMQIETIPLHKVERASIDEAYIDLTEEVKKRITKLSGDRVLVQQLQNTFVVGHGDDKSGENREEGVDQWLTTAFE EEVSDNDIRLAVGALISEEMRAAVYAETGFRCSAGIAHNKMLAKLSCGLHKPNKQTVLPHASVPILYSTLPIKKIRNLGG KFGQSLVEQLGVENMGDLCKFSLKELQACCGDKSGTSDEDLEGSISSPSKRVQSMSEDIIEYEEPEPIPGTSYNEEITAR RLSEMHATEEGTSRRPSELYDIDPNSVDSDVFDALPLDIQNEIKAEMGRQNGLKSPIKTSALPQENGGNCDIQHVENAAT YGDLFTSCEKCGKKLQVWEMEEHMDFHFAQELQQELRQSDAPLGTSNRSENNRQPVGAGTKRKLSAATSTRGRKKQKPNV DKCQRMDNFIIKR |
|