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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_830.1_15250
Locus scaffold830.1 : 41446 ... 46422 : +
To GenomeBrowser scaffold830.1:41446..46422
Genes list of scaffold scaffold830.1
Synonym pfu_aug2.0_397.1_23973

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_830.1_15250.t1 1 1 Lectin_C 124 227 1.6e-16 60.8 7.1e-20 3.5e-16 59.7

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_830.1_15250.t1 gi|260807733|ref|XP_002598663.1| hypothetical protein BRAFLDRAFT_67064 [Branchiostoma floridae] 9.0e-13

Transcript
Transcript IDpfu_aug1.0_830.1_15250.t1
Definition-
>pfu_aug1.0_830.1_15250.t1
atgctgccttttgattctcatgttaagttcatagactgtcaacaacttctgtcaatacccgatgagaagtgttttgaatc
accatgggtcacacgctggacgaatgatgtcagagcttacgtcattcaaatatatgaactgttcacagagtatgttgagc
tggtgtctgaagatatcaatgcgactcttagtgttagccagcgcctgaaaaaggctatagcagaacttcaaatgatagtt
aaagatttaccaaagtctcctgccaagaaagatgaacgaattcaaaaaatgtatacaggacacaaatcatcagaaaattg
ccaattgttcatgtttggtgacactgtgtacttcgtatctgatttcagactcacttggttagaagcatggtctttttgta
ggagtaaaggtgcacttctagtaaacattccaaattcaacgataagcagatatcttatttcaaaattggatccatacaat
ggcgacttttggattgggggcatctgggctcctggaggatatttatggagaacagagttcgggtacagtccgatgacgtg
gtcaaactgggctcccggtgagccaaatcgtaaagaccaaaactgtgtccagttgtggaaaaacgcaggtcacaaatggg
acaactacgattgcgaatttaggaaaactttcatttgcagcagaactttaccataa

Protein
Protein IDpfu_aug1.0_830.1_15250.t1
Definition-
>pfu_aug1.0_830.1_15250.t1
MLPFDSHVKFIDCQQLLSIPDEKCFESPWVTRWTNDVRAYVIQIYELFTEYVELVSEDINATLSVSQRLKKAIAELQMIV
KDLPKSPAKKDERIQKMYTGHKSSENCQLFMFGDTVYFVSDFRLTWLEAWSFCRSKGALLVNIPNSTISRYLISKLDPYN
GDFWIGGIWAPGGYLWRTEFGYSPMTWSNWAPGEPNRKDQNCVQLWKNAGHKWDNYDCEFRKTFICSRTLP

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