Gene
| Gene Model ID | pfu_aug1.0_83099.1_42080 |
|---|---|
| Locus | scaffold83099.1 : 1 ... 2925 : - |
| To GenomeBrowser | scaffold83099.1:1..2925 |
| Genes list of scaffold | scaffold83099.1 |
| Synonym | pfu_aug2.0_799.1_31168 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_83099.1_42080.t1 | 1 | 1 | EF1G | 1 | 95 | 2.8026e-45 | 152.3 | 0.0 | 2.8026e-45 | 152.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_83099.1_42080.t1 | gi|339246947|ref|XP_003375107.1| | elongation factor 1-gamma [Trichinella spiralis] | 5.0e-39 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 4 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 2 |
| maleGonad | 2 |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 2 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_83099.1_42080.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_83099.1_42080.t1 tacatttaacatggatgaattcaagagggaatactccaacaaggataccatcacagaagccctgccttacttctggaaaa actttgataaggaaaattactctatttggtactgtgaatatctatacaacgacgagctcgcaaaagtttttatgacctgt aatttagttggaggaatgtttcaacgactagataagttgaggaaaaacgcctttgccagtatgtgcatatttggagaaga cggcaataattcaattagtggtatttggatctggaaaggacacgagctagcgttcacg |
|
Protein
| Protein ID | pfu_aug1.0_83099.1_42080.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_83099.1_42080.t1 TFNMDEFKREYSNKDTITEALPYFWKNFDKENYSIWYCEYLYNDELAKVFMTCNLVGGMFQRLDKLRKNAFASMCIFGED GNNSISGIWIWKGHELAFT |
|