Gene
| Gene Model ID | pfu_aug1.0_832.1_29449 |
|---|---|
| Locus | scaffold832.1 : 41116 ... 48927 : + |
| To GenomeBrowser | scaffold832.1:41116..48927 |
| Genes list of scaffold | scaffold832.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_832.1_29449.t1 | 3 | 1 | Kelch_6 | 236 | 262 | 1.8e-10 | 40.5 | 0.016 | 34.0 | 4.8 |
| pfu_aug1.0_832.1_29449.t1 | 3 | 1 | Kelch_5 | 236 | 247 | 6.6e-07 | 29.1 | 0.34 | 730.0 | 0.2 |
| pfu_aug1.0_832.1_29449.t1 | 3 | 1 | Kelch_1 | 237 | 246 | 2.0e-17 | 62.4 | 0.9 | 1900.0 | -1.6 |
| pfu_aug1.0_832.1_29449.t1 | 3 | 1 | Kelch_2 | 238 | 249 | 2.0e-08 | 33.6 | 0.98 | 2100.0 | -1.3 |
| pfu_aug1.0_832.1_29449.t1 | 3 | 1 | Kelch_4 | 238 | 262 | 6.9e-07 | 28.9 | 0.18 | 370.0 | 0.9 |
| pfu_aug1.0_832.1_29449.t1 | 3 | 2 | Kelch_1 | 270 | 317 | 2.0e-17 | 62.4 | 1.6e-13 | 3.3e-10 | 39.3 |
| pfu_aug1.0_832.1_29449.t1 | 3 | 2 | Kelch_5 | 270 | 288 | 6.6e-07 | 29.1 | 0.0017 | 3.6 | 7.6 |
| pfu_aug1.0_832.1_29449.t1 | 3 | 2 | Kelch_6 | 272 | 320 | 1.8e-10 | 40.5 | 2.3e-07 | 0.00048 | 20.1 |
| pfu_aug1.0_832.1_29449.t1 | 3 | 2 | Kelch_2 | 272 | 316 | 2.0e-08 | 33.6 | 3.6e-08 | 7.7e-05 | 22.3 |
| pfu_aug1.0_832.1_29449.t1 | 3 | 2 | Kelch_4 | 272 | 317 | 6.9e-07 | 28.9 | 4.1e-06 | 0.0087 | 15.8 |
| pfu_aug1.0_832.1_29449.t1 | 3 | 3 | Kelch_2 | 321 | 339 | 2.0e-08 | 33.6 | 0.0014 | 3.0 | 7.7 |
| pfu_aug1.0_832.1_29449.t1 | 3 | 3 | Kelch_4 | 321 | 358 | 6.9e-07 | 28.9 | 0.00097 | 2.1 | 8.2 |
| pfu_aug1.0_832.1_29449.t1 | 3 | 3 | Kelch_1 | 322 | 358 | 2.0e-17 | 62.4 | 3.9e-07 | 0.00083 | 18.8 |
| pfu_aug1.0_832.1_29449.t1 | 3 | 3 | Kelch_6 | 323 | 361 | 1.8e-10 | 40.5 | 0.00024 | 0.5 | 10.6 |
| pfu_aug1.0_832.1_29449.t1 | 3 | 3 | Kelch_5 | 323 | 355 | 6.6e-07 | 29.1 | 2.2e-06 | 0.0046 | 16.8 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_832.1_29449.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_832.1_29449.t1 atgaccttttatcatcaaacagattatattaaacgaatttgcaatttactacgcactgttaaaagaccgcgaatagcaat ttttaaatcagatgaaatacgatttacttctcggatagacatcgcggtggaggacgtgcaccactatctacaaatatcag cagtgctttctggtcttgaacgactgaggagtcagtgcgaggtggtgctactcaataatcttactgccgaaaacgccatc tacatgttgcacgaaggagaaaagcatggacttcgcagacttgaaaaagaatcaatttatgccatctcgcaacatctacg gagtattgcttatcaacccgagtttctcactcttgagaagcatcaaatacagagcataattgaacaccatcccggggatg agagtcttcttaaacaatttgctggaatatgggatcaagtttttggaaccgagactgcaaagcctatcgagagccccaaa gcagatgaatcaaacttcgaacaaagacaacagcatggcgattctagtgtaagaaggtttggactatctttcatgacgaa cgaaaaacatcagctacaagtggcagtaagggacttcagtacacataaagtttacaccactaattgtactaatgaagtgg ggaaggttgtgaaagtctctccaaattttactgcgtgcgtcatacaggtgacgaagtctgacccgccccatatctttatc acaggaggtgcagacgataacagactgacattggaatgcgatattgttcgtggaaagtggaaacgtagaaaatcgatggc ttgggggagagagggtcatgtcctttgcacattgaataatacgatatacgcaatcggtggcttcatgaggaaaggcgatg aaagacatttggtgcgggatatagaaaaatatgattgcgaaaaaaagacatggtcgtcaatgacatctcttgcaacgcct gtgtactcatgcgcggcggtaagtgtcggttgcaaaatattcatcatcggaggaaagaatgcacttggttccgaagtgaa tgaaattcaggtgttggacacagaaaaaggcacattatcggtgtttaatggtcttccccaaaattgtgccattggcaaag ctatcttgatgaacaatgcaatattctttgcctccaccgctggacaccttattcgaattgacccacgtacaattactctt attactgatacaaccaacatgtaa |
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Protein
| Protein ID | pfu_aug1.0_832.1_29449.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_832.1_29449.t1 MTFYHQTDYIKRICNLLRTVKRPRIAIFKSDEIRFTSRIDIAVEDVHHYLQISAVLSGLERLRSQCEVVLLNNLTAENAI YMLHEGEKHGLRRLEKESIYAISQHLRSIAYQPEFLTLEKHQIQSIIEHHPGDESLLKQFAGIWDQVFGTETAKPIESPK ADESNFEQRQQHGDSSVRRFGLSFMTNEKHQLQVAVRDFSTHKVYTTNCTNEVGKVVKVSPNFTACVIQVTKSDPPHIFI TGGADDNRLTLECDIVRGKWKRRKSMAWGREGHVLCTLNNTIYAIGGFMRKGDERHLVRDIEKYDCEKKTWSSMTSLATP VYSCAAVSVGCKIFIIGGKNALGSEVNEIQVLDTEKGTLSVFNGLPQNCAIGKAILMNNAIFFASTAGHLIRIDPRTITL ITDTTNM |
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