Gene
| Gene Model ID | pfu_aug1.0_8327.1_09745 |
|---|---|
| Locus | scaffold8327.1 : 6318 ... 18805 : - |
| To GenomeBrowser | scaffold8327.1:6318..18805 |
| Genes list of scaffold | scaffold8327.1 |
| Synonym | pfu_aug2.0_345.1_17316 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-TF4 |
| Description | Best hit to NP_937847 max-like protein X isoform beta [Homo sapiens] with 6e-88 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8327.1_09745.t1 | 1 | 1 | HLH | 55 | 111 | 3.3e-16 | 58.7 | 1.7e-19 | 6.4e-16 | 57.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_8327.1_09745.t1 | gi|260816515|ref|XP_002603016.1| | hypothetical protein BRAFLDRAFT_84752 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| >Adult tissues | |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_8327.1_09745.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8327.1_09745.t1 atgagggtggacgagggtccgagtggaagtggtcacaggttccctttctctcgtactagctccactggatccaccccagc aggatgcatgtcatcagcctcgtcagcacaaggatcagatgaggacagtgatagcagcaaaccagtgagttataaggacc gaagaagagaggcacatacacaagccgaacagaaaagacgggatgccataaagaaaggttatgaggagctacagtacata gtgccgacatgtcagaatacagagcagctgggatccaccaaactcagtaaagccaccgtcctacaaagatctattgacta catacagttccttgtgcagcagaagaagaagcaggaagaagacctagattccttgcgtaaggaggtcatggccctcaaaa ttatgaaagcgaattatgagcacattgtaaagacacatcaaaatactcccatgcacggacagaaccaggtgtcagatgaa gtcaaattccaagtgtttcagaatatgatggataccttattccagtcgtttaatgccaccatctctgttgctaactttgc tgagctttctgcatgtgtgtttagctggctggaggaatactgcaaacctcagtcactgagagaggtttgtcttggaattc tacgacaggtgaacaaccaactaaatcattag |
|
Protein
| Protein ID | pfu_aug1.0_8327.1_09745.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8327.1_09745.t1 MRVDEGPSGSGHRFPFSRTSSTGSTPAGCMSSASSAQGSDEDSDSSKPVSYKDRRREAHTQAEQKRRDAIKKGYEELQYI VPTCQNTEQLGSTKLSKATVLQRSIDYIQFLVQQKKKQEEDLDSLRKEVMALKIMKANYEHIVKTHQNTPMHGQNQVSDE VKFQVFQNMMDTLFQSFNATISVANFAELSACVFSWLEEYCKPQSLREVCLGILRQVNNQLNH |
|