Gene
| Gene Model ID | pfu_aug1.0_8341.1_67845 |
|---|---|
| Locus | scaffold8341.1 : 7616 ... 23555 : - |
| To GenomeBrowser | scaffold8341.1:7616..23555 |
| Genes list of scaffold | scaffold8341.1 |
| Synonym | pfu_aug2.0_77.1_23391 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8341.1_67845.t1 | 1 | 1 | Kazal_2 | 190 | 227 | 7.3e-07 | 29.0 | 2.0e-10 | 7.3e-07 | 29.0 |
| pfu_aug1.0_8341.1_67845.t1 | 2 | 1 | PAN_1 | 270 | 331 | 4.7e-07 | 29.4 | 2.3e-09 | 8.4e-06 | 25.4 |
| pfu_aug1.0_8341.1_67845.t1 | 2 | 2 | PAN_1 | 367 | 393 | 4.7e-07 | 29.4 | 0.0029 | 11.0 | 5.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_8341.1_67845.t1 | gi|260830822|ref|XP_002610359.1| | hypothetical protein BRAFLDRAFT_209223 [Branchiostoma floridae] | 8.0e-14 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_8341.1_67845.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8341.1_67845.t1 atgaaggaaactctccaggacagcataaacacgcaccatgtagatgatttggccgatggtggtactgataaatcaaataa cactcaagttgatggtgctaataaagatacgaatcgtgaagacaagagtggaataaaagtacgaaatattgaaaatgagg tcataaatcatcgtagtgttgatggtaatgctgaggaaacaatgaaaggcaaaactgggaatgaaaaacatgagaaaatt gaatcagtcgttaaattgatggatagcacaagaggaccgaagcagaagttgacacagaaaagcagaaataggtttgagac aagaaacgatagaggaagtgtgtcgtctgctcaagtaaagacaaaacaaaatttgcttaaaaatactacagcctcttttt ccacccagcccaacccaccaactaccaaaccaaccaaggttaccccaacaactaaagggaaaagtgggaactccaagtac attatatcaaagccttatggaaatgaataccccgtggtacgcttccgatatcttgatagacagacaaaatgctacggcat caacttgtcatcgaagccggtttgtggccatgataacgtactgtatccaagccattgtgagctccaccgaacagcctgtg tcaccaagaaacatattcgaattgacttcgaggcaaaatgtaggacaaaccagcagacgacatcaagtgtcgctgtttcc atgacaaccactgttgagccaagcaccattttaggatccctatgcgaattcatcgtcagacacgccacggcaggaatact ttggggtcaaaaggtcatgaccgcaaaggtcaactctttggacgaatgtagagacgtatgtgagacagcagacaaaggat gcatgggattcgagtattctgaatccgaaaaatattgtggtctctatgacaacatggatgacgtcatattctggcccaat accaagatgactttttatgagaaaaagcgttgcaaagaaccagaaccagaagaatcaacctgtggttatgagatggtgaa gttgacctctgaccccgtgtatggtatgtgccatattaccgtacacctcctaccggattttgagaagtgtgtggctgagt gtcaggggtgcaaggctttcacctacaagacttacggaggagtatgtgagatcttctacaaccaactgtgtgtggacatg ctcaacaagcaagggaccgtgcactacgtcagacattgcaacagcgaggaagctggaacaacaactgacgtaaaccatgt tattgccatggcaccaacacaagaccatctcagtgtaaagaaagaactcaaggacaatgttgagaaccaagatgacacca tcgttaaaggtgaccaaaacaaacaaacaacagtcatcatcccaactgcggagccgaaatctgatcagcaggtgcaacgg aattctggtttggaccatttggaggtcgtggaaggaggtgccaaaacaatgcaggatccagatgccaaagaggtgaaaaa agacggcaggacgggagtgtcagatgtcaaagtcgatcaagatcccgatactttgtatggagaaagcggtgaaaaggatg acgattctatgtacgagaaaatctgcaccctacaggagtataacaggatgaaaggagatatattgaggtaccattgtgtg aagcttggagaagcacactgtggagatactcaaatacctaaaaagtcatatatagccacattgatgttcagcttttatga tcgtaacatggatgaatccatacagaaagatgaattatgggaaatatggctgatggaaaacttcgacaaaatgttttcat cttgcacgcttttggatttgttcaaatttgaaaacataaaggatgacgcaatatacaaagatgatttcttggatattttt gatataccagaagctgccatgcaggaggagatccaagtcataaccactctggccactgtgggtaacgggctggagatcag gtgtgggctacagccatcatcagacgtatcacagatcgtatggagaagacacggcatggatctaatggaggtcacattcc ctggactggctaatttcgcaaaaccttacaggaagctagtacataaggtcctctaccaaattggccactttcagtccttt gtcagncgactcagttcgggaaaactcaaaattgtttgctgtaaggttgccaaattcggcaatatgttgccaagtttgac aacgttgccgaattctgagtttttccgaactgatatgactggcagcactgataaacgtccagcggcatcaagtagcggtc atcttaatgaagattggtctaagagacagcgatataatggccttaagatgggaagggtcaaacgggagtcaaatctactc tcatatttcacctga |
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Protein
| Protein ID | pfu_aug1.0_8341.1_67845.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8341.1_67845.t1 MKETLQDSINTHHVDDLADGGTDKSNNTQVDGANKDTNREDKSGIKVRNIENEVINHRSVDGNAEETMKGKTGNEKHEKI ESVVKLMDSTRGPKQKLTQKSRNRFETRNDRGSVSSAQVKTKQNLLKNTTASFSTQPNPPTTKPTKVTPTTKGKSGNSKY IISKPYGNEYPVVRFRYLDRQTKCYGINLSSKPVCGHDNVLYPSHCELHRTACVTKKHIRIDFEAKCRTNQQTTSSVAVS MTTTVEPSTILGSLCEFIVRHATAGILWGQKVMTAKVNSLDECRDVCETADKGCMGFEYSESEKYCGLYDNMDDVIFWPN TKMTFYEKKRCKEPEPEESTCGYEMVKLTSDPVYGMCHITVHLLPDFEKCVAECQGCKAFTYKTYGGVCEIFYNQLCVDM LNKQGTVHYVRHCNSEEAGTTTDVNHVIAMAPTQDHLSVKKELKDNVENQDDTIVKGDQNKQTTVIIPTAEPKSDQQVQR NSGLDHLEVVEGGAKTMQDPDAKEVKKDGRTGVSDVKVDQDPDTLYGESGEKDDDSMYEKICTLQEYNRMKGDILRYHCV KLGEAHCGDTQIPKKSYIATLMFSFYDRNMDESIQKDELWEIWLMENFDKMFSSCTLLDLFKFENIKDDAIYKDDFLDIF DIPEAAMQEEIQVITTLATVGNGLEIRCGLQPSSDVSQIVWRRHGMDLMEVTFPGLANFAKPYRKLVHKVLYQIGHFQSF VXRLSSGKLKIVCCKVAKFGNMLPSLTTLPNSEFFRTDMTGSTDKRPAASSSGHLNEDWSKRQRYNGLKMGRVKRESNLL SYFT |
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