Gene
| Gene Model ID | pfu_aug1.0_8342.1_45842 |
|---|---|
| Locus | scaffold8342.1 : 13836 ... 23592 : + |
| To GenomeBrowser | scaffold8342.1:13836..23592 |
| Genes list of scaffold | scaffold8342.1 |
| Synonym | pfu_aug2.0_287.1_23803 |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | six4/5 |
| Description | Highest BLAST hit toEF195741.1Branchiostoma floridae Six4-like mRNA, complete sequence |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8342.1_45842.t2 | 1 | 1 | Homeobox | 161 | 210 | 1.4e-15 | 56.6 | 1.4e-18 | 3.5e-15 | 55.3 |
| pfu_aug1.0_8342.1_45842.t2 | 1 | 1 | Homeobox_KN | 176 | 208 | 2.4e-09 | 36.7 | 2.1e-12 | 5.3e-09 | 35.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_8342.1_45842.t2 | gi|291231307|ref|XP_002735606.1| | PREDICTED: homeobox protein SIX4-like [Saccoglossus kowalevskii] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_8342.1_45842.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8342.1_45842.t1 atggacgaaattaagaaaaatcccgacgaaggaaattcgctcaacaacgaaaatattccaaatccggagtctccatcatc gaattcagaaattacaaacggcaaaagtatgacattttcgcctgagcatgtcgcgtgcgtctgcgaggctcttcaacaga aaggcgacatcgagcgactggcgagattcttgtggtcgctgccccctagcgaactactacgaggaagcgaagcggtgctc aaagcgcgtgccactgtggcattccatcgtgggagctatagggaactttatgcaattctagaaagtcataaattcgacga atccaatcatacgtttctccagaatctttggtacaaggcacattataacgaggcgcaaaagatccgaggaagaccgctag gagccgtcgataaataccgactgcgccggaagtacccgttaccgaaaacgatttgggacggagaagaaacgatatattgc ttcaaagaaaaatcgagacagtcactgaaagagtgttataagaataacagatatccgacaccggacgaaaaaagaaacct ggccaaaaagactggactgaccttaacacaggtcagtaactggttcaagaaccgacggcagcgggataggacgccacatc aaaatcctctcaatccgagcatgtcagggacgtatcgttacaaagacttttcgatgcatctttcggaagaaaatgcactg atacgatatgactttcatttgtcaagtcgtctagactcttcagccgacctgatgaaagtatcttatgcacagaatctgaa taacattgacgaatatttgcatattttgtag |
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| Transcript ID | pfu_aug1.0_8342.1_45842.t2 |
| Definition | - |
>pfu_aug1.0_8342.1_45842.t2 atggacgaaattaagaaaaatcccgacgaaggaaattcgctcaacaacgaaaatattccaaatccggagtctccatcatc gaattcagaaattacaaacggcaaaagtatgacattttcgcctgagcatgtcgcgtgcgtctgcgaggctcttcaacaga aaggcgacatcgagcgactggcgagattcttgtggtcgctgccccctagcgaactactacgaggaagcgaagcggtgctc aaagcgcgtgccactgtggcattccatcgtgggagctatagggaactttatgcaattctagaaagtcataaattcgacga atccaatcatacgtttctccagaatctttggtacaaggcacattataacgaggcgcaaaagatccgaggaagaccgctag gagccgtcgataaataccgactgcgccggaagtacccgttaccgaaaacgatttgggacggagaagaaacgatatattgc ttcaaagaaaaatcgagacagtcactgaaagagtgttataagaataacagatatccgacaccggacgaaaaaagaaacct ggccaaaaagactggactgaccttaacacaggtcagtaactggttcaagaaccgacggcagcgggataggacgccacatc aaaatcctctcaatccgagcatgtcagggtaa |
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Protein
| Protein ID | pfu_aug1.0_8342.1_45842.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8342.1_45842.t1 MDEIKKNPDEGNSLNNENIPNPESPSSNSEITNGKSMTFSPEHVACVCEALQQKGDIERLARFLWSLPPSELLRGSEAVL KARATVAFHRGSYRELYAILESHKFDESNHTFLQNLWYKAHYNEAQKIRGRPLGAVDKYRLRRKYPLPKTIWDGEETIYC FKEKSRQSLKECYKNNRYPTPDEKRNLAKKTGLTLTQVSNWFKNRRQRDRTPHQNPLNPSMSGTYRYKDFSMHLSEENAL IRYDFHLSSRLDSSADLMKVSYAQNLNNIDEYLHIL |
|
| Protein ID | pfu_aug1.0_8342.1_45842.t2 |
| Definition | - |
>pfu_aug1.0_8342.1_45842.t2 MDEIKKNPDEGNSLNNENIPNPESPSSNSEITNGKSMTFSPEHVACVCEALQQKGDIERLARFLWSLPPSELLRGSEAVL KARATVAFHRGSYRELYAILESHKFDESNHTFLQNLWYKAHYNEAQKIRGRPLGAVDKYRLRRKYPLPKTIWDGEETIYC FKEKSRQSLKECYKNNRYPTPDEKRNLAKKTGLTLTQVSNWFKNRRQRDRTPHQNPLNPSMSG |
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