Gene
| Gene Model ID | pfu_aug1.0_8375.1_31576 |
|---|---|
| Locus | scaffold8375.1 : 7351 ... 18895 : - |
| To GenomeBrowser | scaffold8375.1:7351..18895 |
| Genes list of scaffold | scaffold8375.1 |
| Synonym | pfu_aug2.0_31.1_03472 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8375.1_31576.t1 | 3 | 1 | Neur_chan_memb | 61 | 131 | 1.0e-15 | 58.2 | 9.0e-08 | 0.00067 | 19.6 |
| pfu_aug1.0_8375.1_31576.t1 | 3 | 2 | Neur_chan_memb | 174 | 258 | 1.0e-15 | 58.2 | 2.2e-13 | 1.6e-09 | 37.9 |
| pfu_aug1.0_8375.1_31576.t1 | 3 | 3 | Neur_chan_memb | 324 | 349 | 1.0e-15 | 58.2 | 0.0035 | 26.0 | 4.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_8375.1_31576.t1 | gi|121580|sp|P24524.1|GLRA3_RAT | Glycine receptor subunit alpha-3 | 2.0e-19 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_8375.1_31576.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8375.1_31576.t1 atgacttctatttgctctgcgcatgcgcatgtgagactgatgcccgaggaccgaaggatcatcaatgaaatcctgtccaa ggacatgagtgtaccgccgttttacgacacaggaaataggacgaagatcgaaattggtattgtgtttgccgatatgagag tttccgaaaaggctgatgtgcttctatcattttacctctatcaaacatggaaggaatcctcagcacgagtaaagttcgga acactttgcgttctcgccatgattacagaggatgctgggataacttttataatggcggacagcgtccggtccagcgctct ggatgtttggtttgctgtctgtatggtgtttgcaacgattgttccgcttgaatacactattgtccacgtggttgatagtg gacactcatctgctttatacatcgacgtcaatggttgcatggagtttaaagttttcaacagcgcatgtcttgagttgacc atacatgtggagaagaatctgaatcaaaatttcctacggctgtacatgcctagttttttcattattctcgttggttggtt gagcttttgggtagacagaagtcaagtatcggcaagagtaaaatttgggacactctgcgttcttgcaatgataactgaag atgctggaatccagttcttaatgggcgacaacgttcattccagtgcactggatgtttggtttgctgtatgtctgatattt gccactctagttccagttgagtttactgttgttcatgcaatagaccaataccagaaagcgatgatattgtttgaagaggg aaagaaaggtaaaacaaactgtaccgattgtggagaaccaactttcacaagtcaacttctgtttactacagcgtcaccca ttgcatatggaataaaagatgtttcaagcaaagacctacatgaaatgcattgtaagaaggcaaacatcaaatatggattc gtagggagaatttccaccggagagattgagaaaaagttcagaatattatatgtattggcttttactgtctttcagatatt ttactggtgtttttatctgaattacgaagaagattactcataa |
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Protein
| Protein ID | pfu_aug1.0_8375.1_31576.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8375.1_31576.t1 MTSICSAHAHVRLMPEDRRIINEILSKDMSVPPFYDTGNRTKIEIGIVFADMRVSEKADVLLSFYLYQTWKESSARVKFG TLCVLAMITEDAGITFIMADSVRSSALDVWFAVCMVFATIVPLEYTIVHVVDSGHSSALYIDVNGCMEFKVFNSACLELT IHVEKNLNQNFLRLYMPSFFIILVGWLSFWVDRSQVSARVKFGTLCVLAMITEDAGIQFLMGDNVHSSALDVWFAVCLIF ATLVPVEFTVVHAIDQYQKAMILFEEGKKGKTNCTDCGEPTFTSQLLFTTASPIAYGIKDVSSKDLHEMHCKKANIKYGF VGRISTGEIEKKFRILYVLAFTVFQIFYWCFYLNYEEDYS |
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