Gene
| Gene Model ID | pfu_aug1.0_838.1_00515 |
|---|---|
| Locus | scaffold838.1 : 75666 ... 98750 : + |
| To GenomeBrowser | scaffold838.1:75666..98750 |
| Genes list of scaffold | scaffold838.1 |
| Synonym | NA |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | ribosomal protein L37a |
| Description | BLASTP best hit to NCBI Accession FJ763349 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_838.1_00515.t1 | 1 | 1 | Ribosomal_L37ae | 2 | 91 | 8.4e-39 | 131.3 | 6.99949e-42 | 9.5e-39 | 131.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_838.1_00515.t1 | gi|224925978|gb|ACN70009.1| | ribosomal protein L37a [Pinctada fucata] | 5.60519e-45 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_838.1_00515.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_838.1_00515.t1 atggcaaagaggaccaagaaggttggaattgtgggtaaatatggaacccgatatggtgcctctctcagaaagaccatcaa aagaatggaaatttcccagcacgcaaaatacacgtgccaattttgtggaaaggaaaccatgaagaggacggctgtcggca tctgggcatgtgacagatgtagaaaggtcgtcgctggtggagcatgggtttacagcaccagtgccgctgccaccgtcagg agcgcagtcagaagattgagggaaatgaaagaacaataa |
|
Protein
| Protein ID | pfu_aug1.0_838.1_00515.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_838.1_00515.t1 MAKRTKKVGIVGKYGTRYGASLRKTIKRMEISQHAKYTCQFCGKETMKRTAVGIWACDRCRKVVAGGAWVYSTSAAATVR SAVRRLREMKEQ |
|