Gene
| Gene Model ID | pfu_aug1.0_83945.1_13302 |
|---|---|
| Locus | scaffold83945.1 : 51 ... 2611 : - |
| To GenomeBrowser | scaffold83945.1:51..2611 |
| Genes list of scaffold | scaffold83945.1 |
| Synonym | pfu_aug2.0_375.1_17348 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_83945.1_13302.t1 | 6 | 1 | zf-C2H2_4 | 11 | 34 | 8.5e-12 | 44.5 | 0.0026 | 6.4 | 7.3 |
| pfu_aug1.0_83945.1_13302.t1 | 6 | 1 | zf-C2H2 | 12 | 32 | 1.0e-16 | 60.1 | 0.0077 | 19.0 | 5.8 |
| pfu_aug1.0_83945.1_13302.t1 | 6 | 1 | zf-H2C2_2 | 146 | 162 | 5.3e-16 | 58.0 | 0.0029 | 7.1 | 7.1 |
| pfu_aug1.0_83945.1_13302.t1 | 6 | 2 | zf-C2H2 | 152 | 174 | 1.0e-16 | 60.1 | 9.9e-08 | 0.00025 | 21.2 |
| pfu_aug1.0_83945.1_13302.t1 | 6 | 2 | zf-C2H2_4 | 152 | 174 | 8.5e-12 | 44.5 | 5.5e-05 | 0.14 | 12.5 |
| pfu_aug1.0_83945.1_13302.t1 | 6 | 2 | zf-H2C2_2 | 166 | 190 | 5.3e-16 | 58.0 | 5.7e-08 | 0.00014 | 21.9 |
| pfu_aug1.0_83945.1_13302.t1 | 6 | 3 | zf-C2H2 | 180 | 202 | 1.0e-16 | 60.1 | 4.7e-08 | 0.00012 | 22.2 |
| pfu_aug1.0_83945.1_13302.t1 | 6 | 3 | zf-C2H2_4 | 180 | 203 | 8.5e-12 | 44.5 | 4.1e-06 | 0.01 | 16.1 |
| pfu_aug1.0_83945.1_13302.t1 | 6 | 3 | zf-H2C2_2 | 194 | 218 | 5.3e-16 | 58.0 | 5.2e-09 | 1.3e-05 | 25.2 |
| pfu_aug1.0_83945.1_13302.t1 | 6 | 4 | zf-C2H2 | 208 | 230 | 1.0e-16 | 60.1 | 5.2e-05 | 0.13 | 12.6 |
| pfu_aug1.0_83945.1_13302.t1 | 6 | 4 | zf-C2H2_4 | 208 | 230 | 8.5e-12 | 44.5 | 3.3e-05 | 0.081 | 13.2 |
| pfu_aug1.0_83945.1_13302.t1 | 6 | 4 | zf-H2C2_2 | 224 | 246 | 5.3e-16 | 58.0 | 0.0068 | 17.0 | 5.9 |
| pfu_aug1.0_83945.1_13302.t1 | 6 | 5 | zf-C2H2 | 237 | 258 | 1.0e-16 | 60.1 | 5.9e-05 | 0.15 | 12.5 |
| pfu_aug1.0_83945.1_13302.t1 | 6 | 5 | zf-C2H2_4 | 237 | 258 | 8.5e-12 | 44.5 | 0.00044 | 1.1 | 9.7 |
| pfu_aug1.0_83945.1_13302.t1 | 6 | 5 | zf-H2C2_2 | 250 | 275 | 5.3e-16 | 58.0 | 7.3e-10 | 1.8e-06 | 27.9 |
| pfu_aug1.0_83945.1_13302.t1 | 6 | 6 | zf-C2H2 | 264 | 283 | 1.0e-16 | 60.1 | 3.8e-06 | 0.0093 | 16.2 |
| pfu_aug1.0_83945.1_13302.t1 | 6 | 6 | zf-C2H2_4 | 264 | 286 | 8.5e-12 | 44.5 | 8.1e-06 | 0.02 | 15.1 |
| pfu_aug1.0_83945.1_13302.t1 | 6 | 6 | zf-H2C2_2 | 278 | 292 | 5.3e-16 | 58.0 | 0.012 | 29.0 | 5.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_83945.1_13302.t1 | gi|348553086|ref|XP_003462358.1| | PREDICTED: PR domain zinc finger protein 4 isoform X1 [Cavia porcellus] | 1.0e-32 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_83945.1_13302.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_83945.1_13302.t1 agctgccattgtctccagtaacagcaaaaatatgtgaatgtttgacatgtgcaacattgtttaagtcaaggacccagtta aatgcacactcctatgaagtgcatgggattatgaatttagacagaatgacaagtgaaaggagtgaaagggaggcaaactc tcacttaactcaagatgaaatttctgttatttgtggatccaggagtgttttaagtaaagaagcaattggtgacaaggacg gaagtaaagaaacgcaatgtggaggggactctggtacagatgcacttaatggacattcagttatctgtggatctggaggg gacacaagtacagaagctctcagtgggaattctgttatgtgtggatctggtgtggacttaagcacaaaaacactcagtgg gcatccagttatttgtggatatagagtagaattgagtaaagaaacactcaatgttcataaatgtggacactgcaagaaaa ttttcaaggatctgagtaattttaagaagcatcaaaggatacatatgaatgaaagaaattacaagtgtgcagtgtgtcat aaaggtttcagacagaaaatccatctccaggttcacatggcgacgcacaacagtgagagacagttcaaatgtcagtactg cacgaagacattttatcgtaaatatgattgtcaaactcacgagaagtggcacaatcctgaaaaaggcatgaggtgccagt actgctacaaactcttctataagactcaaaacttcaaacgacatcttctaattcatacaggacagaaagacttcgaatgt caaaagtgtgaaaaacgtttctacacaaaacagcatctgaagagacatgagggaaattgtaaaggagaaaggccatattt atataacttagacgagaaagttgatttacagcaagttaataatgctagtgatactataccagcttaa |
|
Protein
| Protein ID | pfu_aug1.0_83945.1_13302.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_83945.1_13302.t1 LPLSPVTAKICECLTCATLFKSRTQLNAHSYEVHGIMNLDRMTSERSEREANSHLTQDEISVICGSRSVLSKEAIGDKDG SKETQCGGDSGTDALNGHSVICGSGGDTSTEALSGNSVMCGSGVDLSTKTLSGHPVICGYRVELSKETLNVHKCGHCKKI FKDLSNFKKHQRIHMNERNYKCAVCHKGFRQKIHLQVHMATHNSERQFKCQYCTKTFYRKYDCQTHEKWHNPEKGMRCQY CYKLFYKTQNFKRHLLIHTGQKDFECQKCEKRFYTKQHLKRHEGNCKGERPYLYNLDEKVDLQQVNNASDTIPA |
|