Gene
| Gene Model ID | pfu_aug1.0_83992.1_42106 |
|---|---|
| Locus | scaffold83992.1 : 1 ... 2595 : - |
| To GenomeBrowser | scaffold83992.1:1..2595 |
| Genes list of scaffold | scaffold83992.1 |
| Synonym | NA |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | titin |
| Description | titin partial gene. BLAST top hit to DQ649453 (Danio rerio) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_83992.1_42106.t1 | 4 | 1 | fn3 | 3 | 85 | 0.0 | 225.7 | 1.7e-18 | 4.1e-15 | 55.6 |
| pfu_aug1.0_83992.1_42106.t1 | 4 | 1 | GPI-anchored | 14 | 81 | 6.7e-09 | 36.1 | 7.0e-06 | 0.017 | 15.5 |
| pfu_aug1.0_83992.1_42106.t1 | 4 | 2 | fn3 | 106 | 186 | 0.0 | 225.7 | 1.4e-18 | 3.4e-15 | 55.9 |
| pfu_aug1.0_83992.1_42106.t1 | 4 | 2 | GPI-anchored | 116 | 132 | 6.7e-09 | 36.1 | 0.36 | 890.0 | 0.4 |
| pfu_aug1.0_83992.1_42106.t1 | 4 | 3 | fn3 | 206 | 288 | 0.0 | 225.7 | 8.8e-19 | 2.2e-15 | 56.5 |
| pfu_aug1.0_83992.1_42106.t1 | 4 | 3 | GPI-anchored | 217 | 284 | 6.7e-09 | 36.1 | 0.0019 | 4.7 | 7.7 |
| pfu_aug1.0_83992.1_42106.t1 | 4 | 4 | fn3 | 307 | 389 | 0.0 | 225.7 | 1.9e-19 | 4.7e-16 | 58.6 |
| pfu_aug1.0_83992.1_42106.t1 | 4 | 4 | GPI-anchored | 319 | 383 | 6.7e-09 | 36.1 | 0.00017 | 0.43 | 11.0 |
Transcript
| Transcript ID | pfu_aug1.0_83992.1_42106.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_83992.1_42106.t1 atgcaccttcgtcaccaagacaattcagcatatccaaggaaggacctgactttgtgaccttggcctggaaacctccatca gaagatggtgggtcaaaggtcaaaggttataccatcaaacaacgtgaaggtccagatggagactggaaaactgtggccaa tataaaaccgtatgatggatcatacaaagtacagaatctgaaagaaggagtagaatattacttctctattgctgcagaaa acgaggctggagaaggtgtcagctgtgaactagaggctcctgttgtaccaaagaaacctccaggaccaccatcaaaacca ataggtccacttgaagtgtcagacatcaacaaatcatctgtaaaattgtcatggcaaccaccatcacatgatggaggatc accaatcaaaggctaccttatagagaagagggaaggccgtaaaccatggacaaaagtagattctattggtccagagacta atttgacagtcaaaggacttactgaaggtgtagaccacttattcagggtctctgccataaacaaacttggtaatagtgag gcacttgagaccaaggataccgtcaaaccaaaaagtctttatgacaaacccagtaaaccaactggtccaatagagttctc agacgtaaccaaggactctgttacgttgtcatggaaaccaccaaacaaagatggaggtacaccaatcacatcttacatca ttgagcagcgtgacgcaaagagaagtacttggacaaaatctggtgatgtagcggcagataaaaccatttttacggcagag aagcttctgactgactgtgactactatttccgtgttacagctgtgaataatgaaggtcaaagttcacctctagaatctgt ggcaactgttcgtcctcagaaaaagaaagaagttccaaaggccccagcatacatcagacccaagaggctgactgctgaca gtgtgaccttggaatggaaaccacccactgacgatggagggtcaaaggtcaaaggttacaaactcagagttaaggaagat ggaagtgacgaatggcagccagtagcatctctgaaaccgtatgataccgaatacaccgtcaaaaaactgaaaactggaaa atcttacaatttctcaattcaagctgagaatgatcttggtattggggagtcagtggaa |
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Protein
| Protein ID | pfu_aug1.0_83992.1_42106.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_83992.1_42106.t1 APSSPRQFSISKEGPDFVTLAWKPPSEDGGSKVKGYTIKQREGPDGDWKTVANIKPYDGSYKVQNLKEGVEYYFSIAAEN EAGEGVSCELEAPVVPKKPPGPPSKPIGPLEVSDINKSSVKLSWQPPSHDGGSPIKGYLIEKREGRKPWTKVDSIGPETN LTVKGLTEGVDHLFRVSAINKLGNSEALETKDTVKPKSLYDKPSKPTGPIEFSDVTKDSVTLSWKPPNKDGGTPITSYII EQRDAKRSTWTKSGDVAADKTIFTAEKLLTDCDYYFRVTAVNNEGQSSPLESVATVRPQKKKEVPKAPAYIRPKRLTADS VTLEWKPPTDDGGSKVKGYKLRVKEDGSDEWQPVASLKPYDTEYTVKKLKTGKSYNFSIQAENDLGIGESVE |
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