Gene
| Gene Model ID | pfu_aug1.0_8402.1_38750 |
|---|---|
| Locus | scaffold8402.1 : 36866 ... 47665 : + |
| To GenomeBrowser | scaffold8402.1:36866..47665 |
| Genes list of scaffold | scaffold8402.1 |
| Synonym | pfu_aug2.0_1015.1_18025 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8402.1_38750.t1 | 1 | 1 | DUF1057 | 58 | 193 | 5.6e-15 | 54.9 | 2.5e-18 | 6.1e-15 | 54.8 |
| pfu_aug1.0_8402.1_38750.t1 | 1 | 1 | Abhydrolase_5 | 61 | 166 | 2.7e-06 | 27.2 | 1.5e-09 | 3.6e-06 | 26.7 |
| pfu_aug1.0_8402.1_38750.t1 | 1 | 1 | Abhydrolase_6 | 62 | 186 | 5.8e-13 | 49.2 | 2.8e-16 | 7.0e-13 | 48.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_8402.1_38750.t1 | gi|308506073|ref|XP_003115219.1| | hypothetical protein CRE_18978 [Caenorhabditis remanei] | 3.0e-13 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_8402.1_38750.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8402.1_38750.t1 atggatgatttgaaagtgaaggtatggaaagtgaaagcagaggatgtggaaccattttcaaaacgatttatatttgttca tactctgacagatgtttatgtagatgtgaaatatggtggtatttacgatgtgtgctacttagactctgatcctacagcag actttaaggtcacatgtcctacggttttagctttccacgaatcacctggctcccacagagactttctgaaagtattgact ccattggcgaaaatgggctacagagttatagtgccaaatttcccaggttatggcgaaacagagggaatgagagctactat ggataatctgtacactggagacattcatgagaaacttgcctttatcaaagattttataaatgttcttgaaatacctcgcg tggacctgctggtaggttttggggagggatgttatccagccatgcattgttctttaacaaatcctaaagtttttagatcc ttggcaatgatatgtccatgtggacataaggaatacagaggtgtaaggccattatcttggatgggtttaacagatagact gtggaagtattactctctgagaccaattctatttggattctggcaagcaaggaagagtaagattggatggaaaaatagga aagcgtatcatgttatacaagctgttatcgaacttagtagattggaatttcaaaat |
|
Protein
| Protein ID | pfu_aug1.0_8402.1_38750.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8402.1_38750.t1 MDDLKVKVWKVKAEDVEPFSKRFIFVHTLTDVYVDVKYGGIYDVCYLDSDPTADFKVTCPTVLAFHESPGSHRDFLKVLT PLAKMGYRVIVPNFPGYGETEGMRATMDNLYTGDIHEKLAFIKDFINVLEIPRVDLLVGFGEGCYPAMHCSLTNPKVFRS LAMICPCGHKEYRGVRPLSWMGLTDRLWKYYSLRPILFGFWQARKSKIGWKNRKAYHVIQAVIELSRLEFQN |
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