Gene
Gene Model ID | pfu_aug1.0_8418.1_67856 |
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Locus | scaffold8418.1 : 22876 ... 35294 : + |
To GenomeBrowser | scaffold8418.1:22876..35294 |
Genes list of scaffold | scaffold8418.1 |
Synonym | pfu_aug2.0_1105.1_18095 |
Manual annotation
Study field | other developmental genes |
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Gene name | PAX-6_like |
Description | BLAST hits to NM_001168156.1 and simple NJ tree also showed an affinity to pax6. (human) |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_8418.1_67856.t1 | 1 | 1 | PAX | 55 | 123 | 3.4e-27 | 94.6 | 2.6e-30 | 9.5e-27 | 93.1 |
pfu_aug1.0_8418.1_67856.t1 | 1 | 1 | Homeobox | 223 | 279 | 3.9e-24 | 84.0 | 2.3e-27 | 8.6e-24 | 82.9 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_8418.1_67856.t1 | gi|194869847|ref|XP_001972533.1| | GG13831 [Drosophila erecta] | 0.0 |
Transcript
Transcript ID | pfu_aug1.0_8418.1_67856.t1 |
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Definition | - |
>pfu_aug1.0_8418.1_67856.t1 atggatccacttagttccgtcagtttccgtctaccttcactgccgagaactgtgatcaagtacccggatgttccgccacc tgccgccatcagtggttacgcccctcccctgaccacgcccaatcccatggttcattccagcagtccgatatgggcacctt attataacccggttgtacagctacggagaaacacgattggtggaagtaaacctaaagtggcgacacctgtcgttgtagcc aagattgaagaatacaagagagataatccaaccatatttgcctgggaaataagggataaattacttgccgatggcatatg cacacagtgcaatcttcccagtgtatcctctatcaacaggattctacgtaatagggcggcagaccgagcagccatagcat acgcccgtatagtagaacattccttcttgccgatgccctaccctcctcccgtttggcagtcccctctgtaccctataaat gaaccattatacattccatctacgtctcaaagaccgataggacctagtccagaaaagatagagacagacaaaagagagga tactatcaaagaaagaacgtcactaccagaatctacggaacaggaagtggttactgcagacgattcagacaccgaaacag acgacagtttttccagccagaaactaagacggaatagaactacattcacatctgaacaactcgacattcttgagcgagag ttcgaaaaaactcattatccgggcattaacacgagggaggaattggcgacaaaaaccaaactttcagaggcaagagtgca ggtatggttttcaaacagaagagcaaagtggcgaaggacccagcgattttcgtttcttcacaacacgaccagggctcttt tctccgcctattctcccaactcgcttgtgacgtcactggacagagaccatagtaccatactagacaggagagtgggcgta gatgacagtccgtatgataacaagtctaagtctgtacccagcatgggtagtgaacattctgcttttgatagaatatcgag tcctggggatacagattcagaaaacgtagaaaaagaataa |
Protein
Protein ID | pfu_aug1.0_8418.1_67856.t1 |
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Definition | - |
>pfu_aug1.0_8418.1_67856.t1 MDPLSSVSFRLPSLPRTVIKYPDVPPPAAISGYAPPLTTPNPMVHSSSPIWAPYYNPVVQLRRNTIGGSKPKVATPVVVA KIEEYKRDNPTIFAWEIRDKLLADGICTQCNLPSVSSINRILRNRAADRAAIAYARIVEHSFLPMPYPPPVWQSPLYPIN EPLYIPSTSQRPIGPSPEKIETDKREDTIKERTSLPESTEQEVVTADDSDTETDDSFSSQKLRRNRTTFTSEQLDILERE FEKTHYPGINTREELATKTKLSEARVQVWFSNRRAKWRRTQRFSFLHNTTRALFSAYSPNSLVTSLDRDHSTILDRRVGV DDSPYDNKSKSVPSMGSEHSAFDRISSPGDTDSENVEKE |