Gene
| Gene Model ID | pfu_aug1.0_8418.1_67856 |
|---|---|
| Locus | scaffold8418.1 : 22876 ... 35294 : + |
| To GenomeBrowser | scaffold8418.1:22876..35294 |
| Genes list of scaffold | scaffold8418.1 |
| Synonym | pfu_aug2.0_1105.1_18095 |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | PAX-6_like |
| Description | BLAST hits to NM_001168156.1 and simple NJ tree also showed an affinity to pax6. (human) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8418.1_67856.t1 | 1 | 1 | PAX | 55 | 123 | 3.4e-27 | 94.6 | 2.6e-30 | 9.5e-27 | 93.1 |
| pfu_aug1.0_8418.1_67856.t1 | 1 | 1 | Homeobox | 223 | 279 | 3.9e-24 | 84.0 | 2.3e-27 | 8.6e-24 | 82.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_8418.1_67856.t1 | gi|194869847|ref|XP_001972533.1| | GG13831 [Drosophila erecta] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_8418.1_67856.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8418.1_67856.t1 atggatccacttagttccgtcagtttccgtctaccttcactgccgagaactgtgatcaagtacccggatgttccgccacc tgccgccatcagtggttacgcccctcccctgaccacgcccaatcccatggttcattccagcagtccgatatgggcacctt attataacccggttgtacagctacggagaaacacgattggtggaagtaaacctaaagtggcgacacctgtcgttgtagcc aagattgaagaatacaagagagataatccaaccatatttgcctgggaaataagggataaattacttgccgatggcatatg cacacagtgcaatcttcccagtgtatcctctatcaacaggattctacgtaatagggcggcagaccgagcagccatagcat acgcccgtatagtagaacattccttcttgccgatgccctaccctcctcccgtttggcagtcccctctgtaccctataaat gaaccattatacattccatctacgtctcaaagaccgataggacctagtccagaaaagatagagacagacaaaagagagga tactatcaaagaaagaacgtcactaccagaatctacggaacaggaagtggttactgcagacgattcagacaccgaaacag acgacagtttttccagccagaaactaagacggaatagaactacattcacatctgaacaactcgacattcttgagcgagag ttcgaaaaaactcattatccgggcattaacacgagggaggaattggcgacaaaaaccaaactttcagaggcaagagtgca ggtatggttttcaaacagaagagcaaagtggcgaaggacccagcgattttcgtttcttcacaacacgaccagggctcttt tctccgcctattctcccaactcgcttgtgacgtcactggacagagaccatagtaccatactagacaggagagtgggcgta gatgacagtccgtatgataacaagtctaagtctgtacccagcatgggtagtgaacattctgcttttgatagaatatcgag tcctggggatacagattcagaaaacgtagaaaaagaataa |
|
Protein
| Protein ID | pfu_aug1.0_8418.1_67856.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8418.1_67856.t1 MDPLSSVSFRLPSLPRTVIKYPDVPPPAAISGYAPPLTTPNPMVHSSSPIWAPYYNPVVQLRRNTIGGSKPKVATPVVVA KIEEYKRDNPTIFAWEIRDKLLADGICTQCNLPSVSSINRILRNRAADRAAIAYARIVEHSFLPMPYPPPVWQSPLYPIN EPLYIPSTSQRPIGPSPEKIETDKREDTIKERTSLPESTEQEVVTADDSDTETDDSFSSQKLRRNRTTFTSEQLDILERE FEKTHYPGINTREELATKTKLSEARVQVWFSNRRAKWRRTQRFSFLHNTTRALFSAYSPNSLVTSLDRDHSTILDRRVGV DDSPYDNKSKSVPSMGSEHSAFDRISSPGDTDSENVEKE |
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