Gene
| Gene Model ID | pfu_aug1.0_8428.1_53176 |
|---|---|
| Locus | scaffold8428.1 : 14454 ... 30885 : - |
| To GenomeBrowser | scaffold8428.1:14454..30885 |
| Genes list of scaffold | scaffold8428.1 |
| Synonym | pfu_aug2.0_12.1_06730 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8428.1_53176.t1 | 1 | 1 | GMC_oxred_N | 94 | 152 | 2.4e-11 | 43.3 | 8.7e-15 | 6.5e-11 | 41.9 |
| pfu_aug1.0_8428.1_53176.t1 | 1 | 1 | GMC_oxred_C | 237 | 378 | 3.9e-29 | 101.7 | 1.7e-32 | 1.3e-28 | 100.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_8428.1_53176.t1 | gi|241861611|ref|XP_002416336.1| | glucose dehydrogenase, putative [Ixodes scapularis] | 6.0e-34 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_8428.1_53176.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8428.1_53176.t1 atgatgttcctcagactgcccctctggtttgtgatgattttggttgttggtgtgacggacagtcaaccgcggtgtcaaca ggtgctcaaaggagaatacgacttcattatagtgtatggaatcctgtttggaccgcttcgtgtcatcgtgccatcgccgg cgatgtcacgatggcgatgctacgatgttacgatgatacgatgttacgatgacgatgatacgatgtcacgaagtgaacat cgtatcttcgccatcgtaacatcgtatcttcgccatcatggcatcagagttccaatatccagagggagggtactgggagg gacgtcggccattgatgatatgacgtacatgaggggaagtccccacgtgtttgacctttgggaggagatggggtcagatg ggtggaatcgcaccgacgttctcccttacttcatcaaggcggaggactatatagcatcagctgataccaatactactcac aatccaggtgacttggcagagagtcacgtggaatcccatctacagctgaggacgctgccgagtaaaattacacagtaccc ggatctacacgtggctgtccataacatgctgccggactatgatcatgctttgttgaaaaagttgaacatacacgattata tgatagaggactggtatagtaagggtttatccagggacggtgtcctggtacacctggccatcttacatccacagagtcga ggaactgtaaagctaaacacctctaatcctgatgactccccactgatagatcctcagtacctccttgtcccagaggatgt agaagatattcttaaaggagttcgttttcttcaagcattgttggatatgccatctttcaaagcagcaggagcggagatgg acaaggaattttcaggctgtagctatcttgaatttgactccgatgattactggagatgtttcattcaaaacttaggttac agtacgaacactccctcaggtagtgttcgaatgggcagagtggacgacataacagctgtagtagatgatgaattaagagt aaaagaagtgactggtcttcgtgtggcagattcttcaataatgcccgaaacgacaggattcacacgggcatcagaggtaa tgattggcgaaaaactggccgccatgatactggataagctggaatatccaaacactcaactccaacctgaacagcctaga atggcgggtgcaagattccaagctccgcaagtaagtccagtgacatccacgaccacgaggaagccattgatgaataacac cgccactcctacaccaaaagtaaccagtaaaccttataccaaacagaaggatgctaaaggagaaaatcctctcagaaaga ccccacatgcagtcgatcagagcaggatcataataaaggataattcagtcaccagagaaaagcaacttgaattctttgta gccacaacacaatcgccagtcaaagaacggaagagcacatcaacacagtcaccaacaactcaaactactcagatgccaac gacaaaatcagcagccacctcaccaccttccggtccgttaccaagcgatgtgttgattgatttagggttaaacccattca cggaagcttcagcaccagtccagcctggggcagcttatgaaaaaacaccagaacagaagaatcaagatattatggccata ctcgagcagcttcttatcagtgatgtatcgcaaaacaatgcagaaccgatcagttctttagagaaggcactcgctggagc tgaagccatggtcactaccgaaaaaccgaaaattacaggagccaatgttaaagcaaacaaagtaacaataaaagaggtaa gagtaaataatgtacagaagtcacctatcgtgaagggcaatcaacctagcgtgacgactggtgcgggtacaagtgcgaca gtctccaaaggtacgactgaagctaatcaaacacctgctgccgtacaaccaaaagtaccatcatcctcattaccaacaaa tattcaagtcactacacaaagtagtactactccgctagacccttctccttcatctagaaactcgccgaaattagtatcaa ctcaacagttgccgccagaacagaagtcccagcaaaatccaccgtcttctcctggtagcaatttcaacacaatccctgta caaatggatcctttccagctcggagctaacccatttccacagaacagtttattaccagatccattaggtgggatgaacag ctttgatattttcagccctctgaatgatatacctcccccaccaccaaacctactgccgcagtctatgtctgtcagtccgt cagccagagacttggtcagttctgtggagcttctacttggaacaactcctggacctagcactgaagccaatttgccaaca cagccaaaccaactttctgcaaatagacaaaattcagtcacgagtgtaaaagcacaatctaaacaagttcaggcaaatca acctaacacagtagctggtactcaacctcaatcaaatccagttcctccaagctctaatgtgaacaatgtcggcaacgcga tgactggtactcaacaatccacagtacaggcgtctccacaaggtaataatgctggcagtgcgtccttgaactctgcacca ccattgccgaggaacaaccaaagacagagtatgttgtttgtggaaccaccacgaaggtcacaaaatgcaaatctccaatc tcaaggtgtcagcaagagacctgctcaactcggtatagaacctccagcaaataatgcagctaatagtattcacggaaatt cgaatgttcaacaagcaagggaaccgcagattacacaaaatataaagaacgaaatacaaatcggtcaaaatggccagttc gtctcgcagacctcaggttccaacactaactttttcattcctgattcaagtcagggaaaccaaaacactggaagctttag taatgaaatttcatccaatcttttcattccagatagtttttcaaataataataacatagacttcgcgcagaatgttcgtt cagcagtgaatcaagccaatcagaatgcatttctgcctcccactgtgcactccaacttccaacggagcaacagcctgggt ccaaatggacaatcgtggaactttaagtaa |
|
Protein
| Protein ID | pfu_aug1.0_8428.1_53176.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8428.1_53176.t1 MMFLRLPLWFVMILVVGVTDSQPRCQQVLKGEYDFIIVYGILFGPLRVIVPSPAMSRWRCYDVTMIRCYDDDDTMSRSEH RIFAIVTSYLRHHGIRVPISRGRVLGGTSAIDDMTYMRGSPHVFDLWEEMGSDGWNRTDVLPYFIKAEDYIASADTNTTH NPGDLAESHVESHLQLRTLPSKITQYPDLHVAVHNMLPDYDHALLKKLNIHDYMIEDWYSKGLSRDGVLVHLAILHPQSR GTVKLNTSNPDDSPLIDPQYLLVPEDVEDILKGVRFLQALLDMPSFKAAGAEMDKEFSGCSYLEFDSDDYWRCFIQNLGY STNTPSGSVRMGRVDDITAVVDDELRVKEVTGLRVADSSIMPETTGFTRASEVMIGEKLAAMILDKLEYPNTQLQPEQPR MAGARFQAPQVSPVTSTTTRKPLMNNTATPTPKVTSKPYTKQKDAKGENPLRKTPHAVDQSRIIIKDNSVTREKQLEFFV ATTQSPVKERKSTSTQSPTTQTTQMPTTKSAATSPPSGPLPSDVLIDLGLNPFTEASAPVQPGAAYEKTPEQKNQDIMAI LEQLLISDVSQNNAEPISSLEKALAGAEAMVTTEKPKITGANVKANKVTIKEVRVNNVQKSPIVKGNQPSVTTGAGTSAT VSKGTTEANQTPAAVQPKVPSSSLPTNIQVTTQSSTTPLDPSPSSRNSPKLVSTQQLPPEQKSQQNPPSSPGSNFNTIPV QMDPFQLGANPFPQNSLLPDPLGGMNSFDIFSPLNDIPPPPPNLLPQSMSVSPSARDLVSSVELLLGTTPGPSTEANLPT QPNQLSANRQNSVTSVKAQSKQVQANQPNTVAGTQPQSNPVPPSSNVNNVGNAMTGTQQSTVQASPQGNNAGSASLNSAP PLPRNNQRQSMLFVEPPRRSQNANLQSQGVSKRPAQLGIEPPANNAANSIHGNSNVQQAREPQITQNIKNEIQIGQNGQF VSQTSGSNTNFFIPDSSQGNQNTGSFSNEISSNLFIPDSFSNNNNIDFAQNVRSAVNQANQNAFLPPTVHSNFQRSNSLG PNGQSWNFK |
|