Gene
| Gene Model ID | pfu_aug1.0_844.1_65662 |
|---|---|
| Locus | scaffold844.1 : 2855 ... 20315 : - |
| To GenomeBrowser | scaffold844.1:2855..20315 |
| Genes list of scaffold | scaffold844.1 |
| Synonym | pfu_aug2.0_1115.1_18102 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_844.1_65662.t1 | 6 | 1 | BNR_2 | 74 | 91 | 1.4e-06 | 27.8 | 0.38 | 930.0 | -1.2 |
| pfu_aug1.0_844.1_65662.t1 | 5 | 1 | BNR | 79 | 88 | 3.2e-11 | 41.3 | 0.0023 | 5.7 | 7.1 |
| pfu_aug1.0_844.1_65662.t1 | 6 | 2 | BNR_2 | 229 | 244 | 1.4e-06 | 27.8 | 0.064 | 160.0 | 1.4 |
| pfu_aug1.0_844.1_65662.t1 | 5 | 2 | BNR | 232 | 242 | 3.2e-11 | 41.3 | 0.0012 | 3.1 | 8.0 |
| pfu_aug1.0_844.1_65662.t1 | 3 | 1 | EGF_2 | 312 | 338 | 1.2e-06 | 28.5 | 9.6e-09 | 2.4e-05 | 24.4 |
| pfu_aug1.0_844.1_65662.t1 | 6 | 3 | BNR_2 | 429 | 459 | 1.4e-06 | 27.8 | 0.0037 | 9.1 | 5.4 |
| pfu_aug1.0_844.1_65662.t1 | 5 | 3 | BNR | 444 | 454 | 3.2e-11 | 41.3 | 5.1e-05 | 0.13 | 12.2 |
| pfu_aug1.0_844.1_65662.t1 | 3 | 2 | EGF_2 | 525 | 551 | 1.2e-06 | 28.5 | 0.0007 | 1.7 | 8.8 |
| pfu_aug1.0_844.1_65662.t1 | 6 | 4 | BNR_2 | 638 | 667 | 1.4e-06 | 27.8 | 0.011 | 28.0 | 3.8 |
| pfu_aug1.0_844.1_65662.t1 | 6 | 5 | BNR_2 | 795 | 812 | 1.4e-06 | 27.8 | 0.048 | 120.0 | 1.8 |
| pfu_aug1.0_844.1_65662.t1 | 5 | 4 | BNR | 801 | 810 | 3.2e-11 | 41.3 | 0.0002 | 0.5 | 10.3 |
| pfu_aug1.0_844.1_65662.t1 | 3 | 3 | EGF_2 | 852 | 862 | 1.2e-06 | 28.5 | 0.05 | 120.0 | 2.9 |
| pfu_aug1.0_844.1_65662.t1 | 6 | 6 | BNR_2 | 1037 | 1065 | 1.4e-06 | 27.8 | 0.002 | 4.8 | 6.3 |
| pfu_aug1.0_844.1_65662.t1 | 5 | 5 | BNR | 1052 | 1061 | 3.2e-11 | 41.3 | 0.00041 | 1.0 | 9.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_844.1_65662.t1 | gi|301786587|ref|XP_002928711.1| | PREDICTED: reelin, partial [Ailuropoda melanoleuca] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_844.1_65662.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_844.1_65662.t1 atgtcctcctccagccttatgaatgtacgaggggcgtcgcttgggtatgactgtgatgtactggcctcggggaaggcatt ggtgttcaacgcaggaggcccccgcaggctggtcaccacagacttcaatacaacaaataacagatatatacagttttaca taagagttggtagtaattcagtcctgtccaagtgtccaccgcctgaccgcgcctcagagtctgttatactagactactca tgtaatgggggactcacatgggacctcatcaaagtcttcagctcagaagatatcagagacccacaagctgacattgttat gttgcctgccaatgccaagggcccggcatgtcggtttaggttttggcagcctaaccattcagggcctgggtttgatgtct gggctattgatgggctgagcctgaatgaccagctatttaacactctaaacctaccaatggatgactacagaaataattca caggaagtagcggtcaatcttggcaggattacggatggttattgtgacggaaggaaaagtatgagtttcatagatgagaa agtagatggagatatgagatttctgatgactgagccattacatattggaccgacctacataatgcagtttgacctagtta tgggctgtaacctgatgtatgatatgacaaaggacaacctgctatatttagaatattcctcagatcatggtttgagctgg tccctggtacaggagccctgcgtccctcctacatcttgtaaggagtacaaagaggggaccatatacaaaccctggaagta caccaagtggactcaagtcactgtcatgctgccaccctctacatggggccatgccattcgtttccgtttgcggcaatctg attggtcgactacagactcttgggctgtatcgaggctgtacattggtcagcagtgtcctagcatgtgtaatggacatgga acttgcgtagaaggggtctgtcaatgtgagagtggcttcagtggggaggagtgtaaagcatcaacacctatggattcctc tatgcaggcagacttcggtctccgctatgagcctgaggaggactttaagcatatctggggaggggaggatcatgctgatg tgatggactctggtatgtggcttatagtgacagagggggtaaggggaaagtactgtcaggccagggaccccgcccttatc ctagcaaatcaggaaaataataagtatgtcatcacaaaggaccttgaccttgaagctgttgatgtaatccagtttaagat taatgtaggctgtagtaaccagtttagattggaccatccagtgttactgcagtacagccataacggtggtcagacatgga gactggtccatgagccgtgttaccaggagaacgactgtgacggcctacatacagaggggactatatactactctggtcca cagggctcctggcagactgtaatgatacccgtgtctgaagaagtggccatgcaccccgttatgtttcgatggtggcagcc tggtggttatgccttcagttttgctctgaatgatgtctacataggtcccccatgtccagagaactgtcacagaaatggtc tgtgtcataatgacaggtgtgaatgtttacagggatttacagatgttgactgtgacttccttggagacagtccctatgga ttggtagactggtttgataatcaccacgaacccaaggatacctggaagagggttatgggaggtaaactaggactggggtg tggagtggtggattatgggaactctatgtacttcagtggagaaggtataagggaagccgtcacagtacctcttaacacag tgcatctgaggatgctgcaattcatggtgaaaataggaggaaacggagatgcgatcagatgtacgacacctataagtcgt aatgaaggaatcattgtggattattctaccgataatgaaataacctggaatgttctaaagatggtggaacctcgtataca gaatgaaacaacagagtttgtaaccctggaacttccacctggagcaaagacagagagaactatatttaggttctggcagc ccttaggatatggagggatgcctcgagcagaatggggtctcgacagtgttattataggtgtaaacgagacaaatgttaac ggcttccaggacgactttaactccatgatgcctgatcctcagaactggttacagacagagagtgctgtacccagaatcac ctgccaatcaaacggaaacgctctggaatttagtagagacaaagatttgcggtttgctgagacacaggacttccacatct ccccatcatctttccttcagtttgacattgccatggcttgtgactccctatacagcacgttgtacggtgtaatgctggag tactcggtagacatgggacagacctggcaccctgtagtggaccagtgtacaccaccagacttccagtgtagtggttacca tctcagtagtgaatacatgtcagaacaacataaaaactggaccaggatcacagtctatctacctcctggtgctgtttgcg atgctggattctcaggtcctctatgtgaaccttctcggccattacccatgatgcttagagatgattttaacaaggataac atagacatggagaattggagagagatatacggaggggagacctctaacatctgtggacagattgtcagcggaaaagctct caccttccatgaggaccacatgaggatgatagtgagccgtgacattgacaccactatgctggagttggtagagttttact ttaagtatggctgtaatgtcgacttatttatcttacaagtggacatatttatcttacaagtcgacttatcttacaagtcg acttatttatcttacncttttactatgtatatagacctaattttatacttcattaggcaagatgctttcgacatgggcag tagacaacttttacattgagcagacacacgtacagcagggatatcagccatggtgttcagacatggaccaaagtctggta gacgttatgtggttaccagcgatcttgatgttggaccaatgtctgttgtacaatttgacataaatgttggttgtgagtca gaacccagtgagaagtatcccattcggttagagtattcagctaatggaggtaaaacatggcaccttctggtaccaaactg tgctgagacatcgtctgctagatgttttgatgtggacctccatcctaccctgtattatggaggaaccacaaagtattgga ggaggattgttgtgccattagataacatctacatttgtggttgtctagtggtaaagatttcgggcctgtaa |
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Protein
| Protein ID | pfu_aug1.0_844.1_65662.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_844.1_65662.t1 MSSSSLMNVRGASLGYDCDVLASGKALVFNAGGPRRLVTTDFNTTNNRYIQFYIRVGSNSVLSKCPPPDRASESVILDYS CNGGLTWDLIKVFSSEDIRDPQADIVMLPANAKGPACRFRFWQPNHSGPGFDVWAIDGLSLNDQLFNTLNLPMDDYRNNS QEVAVNLGRITDGYCDGRKSMSFIDEKVDGDMRFLMTEPLHIGPTYIMQFDLVMGCNLMYDMTKDNLLYLEYSSDHGLSW SLVQEPCVPPTSCKEYKEGTIYKPWKYTKWTQVTVMLPPSTWGHAIRFRLRQSDWSTTDSWAVSRLYIGQQCPSMCNGHG TCVEGVCQCESGFSGEECKASTPMDSSMQADFGLRYEPEEDFKHIWGGEDHADVMDSGMWLIVTEGVRGKYCQARDPALI LANQENNKYVITKDLDLEAVDVIQFKINVGCSNQFRLDHPVLLQYSHNGGQTWRLVHEPCYQENDCDGLHTEGTIYYSGP QGSWQTVMIPVSEEVAMHPVMFRWWQPGGYAFSFALNDVYIGPPCPENCHRNGLCHNDRCECLQGFTDVDCDFLGDSPYG LVDWFDNHHEPKDTWKRVMGGKLGLGCGVVDYGNSMYFSGEGIREAVTVPLNTVHLRMLQFMVKIGGNGDAIRCTTPISR NEGIIVDYSTDNEITWNVLKMVEPRIQNETTEFVTLELPPGAKTERTIFRFWQPLGYGGMPRAEWGLDSVIIGVNETNVN GFQDDFNSMMPDPQNWLQTESAVPRITCQSNGNALEFSRDKDLRFAETQDFHISPSSFLQFDIAMACDSLYSTLYGVMLE YSVDMGQTWHPVVDQCTPPDFQCSGYHLSSEYMSEQHKNWTRITVYLPPGAVCDAGFSGPLCEPSRPLPMMLRDDFNKDN IDMENWREIYGGETSNICGQIVSGKALTFHEDHMRMIVSRDIDTTMLELVEFYFKYGCNVDLFILQVDIFILQVDLSYKS TYLSYXFTMYIDLILYFIRQDAFDMGSRQLLHXADTRTAGISAMVFRHGPKSGRRYVVTSDLDVGPMSVVQFDINVGCES EPSEKYPIRLEYSANGGKTWHLLVPNCAETSSARCFDVDLHPTLYYGGTTKYWRRIVVPLDNIYICGCLVVKISGL |
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