Gene
Gene Model ID | pfu_aug1.0_8460.1_60436 |
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Locus | scaffold8460.1 : 18706 ... 43182 : + |
To GenomeBrowser | scaffold8460.1:18706..43182 |
Genes list of scaffold | scaffold8460.1 |
Synonym | pfu_aug2.0_5110.1_02705 |
Manual annotation
Study field | other developmental genes |
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Gene name | Eomesodermin |
Description | BLAST hits to various organisms' Eomes, Tbr1, Tbx21.Simple NJ tree shows an affinity to HsEomes, HsTbr1, and HsTbx21. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_8460.1_60436.t1 | 1 | 1 | T-box | 183 | 365 | 0.0 | 273.0 | 0.0 | 0.0 | 272.3 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_8460.1_60436.t1 | gi|11994948|dbj|BAB19985.1| | Pf-TBRAIN [Ptychodera flava] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
8-16cell | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_8460.1_60436.t1 |
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Definition | - |
>pfu_aug1.0_8460.1_60436.t1 atggccaatgcaacaggatatcccgcatatcccgattctagactggaatcaacatatacagcaaatgcagagagatgttt ggaaagtgagggacactacactctccccagtctgaaaccttattactgtgaagggtatgcctatccagagggccaacaac agagttcatacacacatctgaccccggaaaattcaagtcccgagaaaagttatgaggaaacggaagatttgtcgccaaat gcagggtatcaatcgccgggtagtgggggaacacccagctatgcatgtctgcaacccgttacccaagtccatcgccaaga tgcccatgggtaccaagaatcgtacacccaacaggatacgtataagtacaacggctacatgccacaagttgatcccaata tgatgtactatgggggcaactataatgcgcaacccgcacagcatacgcagcagcagcagcaaatgcccagcgggaataat acgtcatgcgtatcgcccaatgggcaaagcaatggccaaggaagatttcagcaaaacaaagcctgcattcagctgtgtaa tgcagaactgtgggctcgattccatcaacatacgacagagatgatcataacaaaacaagggaggcggatgttccctacac tacagttcagcctggcgggactggatccgcacaaacagtacaacgtctttgtggatatgattttagcggatccaaaccac tggaaattccaaagcggaaaatgggttccatgtggacaagcggaacaattaccacaggttggtcgagtctacctccatcc tgattctccaagcagcggttcccattggatgaaacaggacattgtttttggaaaactgaaactaacaaataacagaaata acgatcagggccatatcgttctaaattccatgcacaagtaccagcctcgtattcatgttatcgaggtcggctcgtgtgga ccaaacgaccagaagaaccttcagacgcatgcgtttccggaaacacaatttatagcagttactgcttatcaaaacactga catcacacagctgaaaattgataataatccatttgcaaaaggatttcgagataattatgatggtcgcaatatagataaca gtacgcctcccaaccagggttacattccttttccatcttacggacaacatccttatcagaatggccattacggctctcag gaccccatgctaagggctaatcaaggcatcccgtatggcggaacattagaggcaaagttcagctatcaacgaaatctttc aaatacacatgtagaacaacgacaagattaa |
Protein
Protein ID | pfu_aug1.0_8460.1_60436.t1 |
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Definition | - |
>pfu_aug1.0_8460.1_60436.t1 MANATGYPAYPDSRLESTYTANAERCLESEGHYTLPSLKPYYCEGYAYPEGQQQSSYTHLTPENSSPEKSYEETEDLSPN AGYQSPGSGGTPSYACLQPVTQVHRQDAHGYQESYTQQDTYKYNGYMPQVDPNMMYYGGNYNAQPAQHTQQQQQMPSGNN TSCVSPNGQSNGQGRFQQNKACIQLCNAELWARFHQHTTEMIITKQGRRMFPTLQFSLAGLDPHKQYNVFVDMILADPNH WKFQSGKWVPCGQAEQLPQVGRVYLHPDSPSSGSHWMKQDIVFGKLKLTNNRNNDQGHIVLNSMHKYQPRIHVIEVGSCG PNDQKNLQTHAFPETQFIAVTAYQNTDITQLKIDNNPFAKGFRDNYDGRNIDNSTPPNQGYIPFPSYGQHPYQNGHYGSQ DPMLRANQGIPYGGTLEAKFSYQRNLSNTHVEQRQD |