Gene
| Gene Model ID | pfu_aug1.0_8460.1_60436 |
|---|---|
| Locus | scaffold8460.1 : 18706 ... 43182 : + |
| To GenomeBrowser | scaffold8460.1:18706..43182 |
| Genes list of scaffold | scaffold8460.1 |
| Synonym | pfu_aug2.0_5110.1_02705 |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | Eomesodermin |
| Description | BLAST hits to various organisms' Eomes, Tbr1, Tbx21.Simple NJ tree shows an affinity to HsEomes, HsTbr1, and HsTbx21. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8460.1_60436.t1 | 1 | 1 | T-box | 183 | 365 | 0.0 | 273.0 | 0.0 | 0.0 | 272.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_8460.1_60436.t1 | gi|11994948|dbj|BAB19985.1| | Pf-TBRAIN [Ptychodera flava] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| 8-16cell | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_8460.1_60436.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8460.1_60436.t1 atggccaatgcaacaggatatcccgcatatcccgattctagactggaatcaacatatacagcaaatgcagagagatgttt ggaaagtgagggacactacactctccccagtctgaaaccttattactgtgaagggtatgcctatccagagggccaacaac agagttcatacacacatctgaccccggaaaattcaagtcccgagaaaagttatgaggaaacggaagatttgtcgccaaat gcagggtatcaatcgccgggtagtgggggaacacccagctatgcatgtctgcaacccgttacccaagtccatcgccaaga tgcccatgggtaccaagaatcgtacacccaacaggatacgtataagtacaacggctacatgccacaagttgatcccaata tgatgtactatgggggcaactataatgcgcaacccgcacagcatacgcagcagcagcagcaaatgcccagcgggaataat acgtcatgcgtatcgcccaatgggcaaagcaatggccaaggaagatttcagcaaaacaaagcctgcattcagctgtgtaa tgcagaactgtgggctcgattccatcaacatacgacagagatgatcataacaaaacaagggaggcggatgttccctacac tacagttcagcctggcgggactggatccgcacaaacagtacaacgtctttgtggatatgattttagcggatccaaaccac tggaaattccaaagcggaaaatgggttccatgtggacaagcggaacaattaccacaggttggtcgagtctacctccatcc tgattctccaagcagcggttcccattggatgaaacaggacattgtttttggaaaactgaaactaacaaataacagaaata acgatcagggccatatcgttctaaattccatgcacaagtaccagcctcgtattcatgttatcgaggtcggctcgtgtgga ccaaacgaccagaagaaccttcagacgcatgcgtttccggaaacacaatttatagcagttactgcttatcaaaacactga catcacacagctgaaaattgataataatccatttgcaaaaggatttcgagataattatgatggtcgcaatatagataaca gtacgcctcccaaccagggttacattccttttccatcttacggacaacatccttatcagaatggccattacggctctcag gaccccatgctaagggctaatcaaggcatcccgtatggcggaacattagaggcaaagttcagctatcaacgaaatctttc aaatacacatgtagaacaacgacaagattaa |
|
Protein
| Protein ID | pfu_aug1.0_8460.1_60436.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8460.1_60436.t1 MANATGYPAYPDSRLESTYTANAERCLESEGHYTLPSLKPYYCEGYAYPEGQQQSSYTHLTPENSSPEKSYEETEDLSPN AGYQSPGSGGTPSYACLQPVTQVHRQDAHGYQESYTQQDTYKYNGYMPQVDPNMMYYGGNYNAQPAQHTQQQQQMPSGNN TSCVSPNGQSNGQGRFQQNKACIQLCNAELWARFHQHTTEMIITKQGRRMFPTLQFSLAGLDPHKQYNVFVDMILADPNH WKFQSGKWVPCGQAEQLPQVGRVYLHPDSPSSGSHWMKQDIVFGKLKLTNNRNNDQGHIVLNSMHKYQPRIHVIEVGSCG PNDQKNLQTHAFPETQFIAVTAYQNTDITQLKIDNNPFAKGFRDNYDGRNIDNSTPPNQGYIPFPSYGQHPYQNGHYGSQ DPMLRANQGIPYGGTLEAKFSYQRNLSNTHVEQRQD |
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