Gene
| Gene Model ID | pfu_aug1.0_8468.1_24400 |
|---|---|
| Locus | scaffold8468.1 : 5163 ... 23925 : - |
| To GenomeBrowser | scaffold8468.1:5163..23925 |
| Genes list of scaffold | scaffold8468.1 |
| Synonym | pfu_aug2.0_554.1_14294 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8468.1_24400.t1 | 4 | 1 | RGS | 59 | 146 | 4.7e-32 | 110.5 | 8.9e-08 | 0.0013 | 18.7 |
| pfu_aug1.0_8468.1_24400.t1 | 4 | 2 | RGS | 202 | 232 | 4.7e-32 | 110.5 | 0.32 | 4700.0 | -2.4 |
| pfu_aug1.0_8468.1_24400.t1 | 4 | 3 | RGS | 282 | 363 | 4.7e-32 | 110.5 | 1.2e-12 | 1.8e-08 | 34.4 |
| pfu_aug1.0_8468.1_24400.t1 | 4 | 4 | RGS | 378 | 502 | 4.7e-32 | 110.5 | 4.2e-19 | 6.3e-15 | 55.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_8468.1_24400.t1 | gi|167736404|ref|NP_001108078.1| | A-kinase anchor protein 10, mitochondrial [Rattus norvegicus] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_8468.1_24400.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8468.1_24400.t1 atgtcttttttccgccgtaggaaagaaggccccttaattcctgctgtagagtttgggctggcagataaacctgtcaaact gatagtagaggaagaggactttgatcctggagatttaggaaattacaacaaatcccagaatgccacatggaatacagcgt ctcgtttatcaaagagtctacaggaggttctgaaagataaagatgccttatcgtgtctcattcactttatggattctcgt aaggctggtgctctaatacgattctggtgtgacgctgacagtttccaagcggcaacatggagtcgaatacggacacattc ccttaacgtcaccagacaaaatactttttcaggaagagggaggcaacagacagaagcaaaatctcctagtagtgattcat gcagtaaggtactcaaagattatgtggactccagtagtataagttctagtcagacactgtcggaagaaaagacaagccct cgtgttttacccgaagacgaattagccccgcaactttcaccgaattcatctagtgctaataatgacatccaccagaatat atcgggatctactcagaatactgtcgatgtgtcttctataaccccagctgtgatatcaccacctacttcttcaaacctat cagacttacatacagacacacaaaggaacgtacatactaatatacagaccgaaagtcaaatatctacctgtgatagtgct gcatctcacttggttcgttcagtggacggcagtgtttccccaggaatattagagccccctggtgccgaaacatccataca tgtatctccaccaaaacctgcacgttcaaaaagtcttacagtagcagatttagctgaaaaattaaaaagaagtatagaaa gagatgctgtttcaatattccaaaaatatctatcccatgatgcctcaaatcctgtcggtatttctgatcaactcagaaat gaatgtatacgcaaaatttgtagagaggatggagaggtggatcctaactgcttcatggagtgccaaacttttatacttaa taaaataaacctggaatatttttctgagtttttgtccagtgcattccactacagacatcaaatcaacgtgttaacggggt ctatagtttgccttaatgatatcctgtacaatgaagggtcaatattctacttcatggagtatatggaacaagagggaggc agtaacctactccagttcttactagcggtagataatttccacaaacatttgatctcactgggtgaaggatacgatggtac ggaagcacagactgacgctatggtcatctatgacaaatatttttccctccaagcaagtcatccgttaggatttgatgata agatcaggtttgatgtagagtgtaatatatgtagagaagaaggcccgttacctgactgctttcttaaaccacgtagtatt gtactcagaacaatggaaaagatgtattttcctggatttttacaaagtgatatctactacaaatacttgtcagagctggt tagcacagtccagattgcctctgacctaccccaaaaacctaaacatcgaagacaagatagcgacgcctcctctgtacata gttcacacagtgccggcagtgaaagtgtcagtcataaaaacacgctactcgccatggataccagtcatctacgtaaaggt ctgcagaaattacacgtcagtgatctcaacgtagacccggcactgcttaatcctgaaaatctttggaaacgtagtgatgc taggtatgtattagacatgataattatacaagggatgtacatttaa |
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Protein
| Protein ID | pfu_aug1.0_8468.1_24400.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8468.1_24400.t1 MSFFRRRKEGPLIPAVEFGLADKPVKLIVEEEDFDPGDLGNYNKSQNATWNTASRLSKSLQEVLKDKDALSCLIHFMDSR KAGALIRFWCDADSFQAATWSRIRTHSLNVTRQNTFSGRGRQQTEAKSPSSDSCSKVLKDYVDSSSISSSQTLSEEKTSP RVLPEDELAPQLSPNSSSANNDIHQNISGSTQNTVDVSSITPAVISPPTSSNLSDLHTDTQRNVHTNIQTESQISTCDSA ASHLVRSVDGSVSPGILEPPGAETSIHVSPPKPARSKSLTVADLAEKLKRSIERDAVSIFQKYLSHDASNPVGISDQLRN ECIRKICREDGEVDPNCFMECQTFILNKINLEYFSEFLSSAFHYRHQINVLTGSIVCLNDILYNEGSIFYFMEYMEQEGG SNLLQFLLAVDNFHKHLISLGEGYDGTEAQTDAMVIYDKYFSLQASHPLGFDDKIRFDVECNICREEGPLPDCFLKPRSI VLRTMEKMYFPGFLQSDIYYKYLSELVSTVQIASDLPQKPKHRRQDSDASSVHSSHSAGSESVSHKNTLLAMDTSHLRKG LQKLHVSDLNVDPALLNPENLWKRSDARYVLDMIIIQGMYI |
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