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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_8519.1_38771
Locus scaffold8519.1 : 8476 ... 17308 : +
To GenomeBrowser scaffold8519.1:8476..17308
Genes list of scaffold scaffold8519.1
Synonym pfu_aug2.0_469.1_30802

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_8519.1_38771.t1 1 1 CH 8 93 3.5e-17 62.3 1.7e-20 8.5e-17 61.1
pfu_aug1.0_8519.1_38771.t1 1 1 CAMSAP_CH 8 71 6.7e-10 38.4 3.2e-13 1.6e-09 37.2

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_8519.1_38771.t1 gi|291226587|ref|XP_002733277.1| 0.0

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 3
>Adult tissues
mantle 1

Transcript
Transcript IDpfu_aug1.0_8519.1_38771.t1
Definition-
>pfu_aug1.0_8519.1_38771.t1
atggcggacggttaccgggacgtagaggtcagggacatgacctcgtcctggaaggacggccttgctttctgtgccatcat
ccatcgtcatcgtccagacttgatagattatgatgccctctccaaagagaatatttttgataacaatcagctggcgtttg
aggtagcagagaaggagttaggaataccggccctacttgacgctccagacatggtggccatcagggtcccagacaaactc
agcgtggttacatacgtatcacagtattacaattacttctgtaataaaccacagctgggtggtcctggagtgaagaagcc
aaatacactgaagagaacccaggctacaccaacgggacctgatgctaaacgacagtcccttggacctaatgatgggaccc
cgaacaaggacagacaagtttcaatgggagacaaatgtgccatatgtcataagaaggtataccttttagaacgtcacgta
aatgaaggacagctctatcataggacttgtttcaggagtagtgataattcccctcaaagaaaaatcaataaacgtttaga
tgccatgggcgaccgagaaagtgatgagaagaaatcattgcaggataaaaaaggtgaagaaccaaatttctggaagagaa
gagctgatgctaaaaagactgagagcaaatcaaacggacacgtaaacagtgacgctgataaaggacaagtgcctaacaaa
aaacatgacagtagtggagtcttaagttcccttgtgcataatttgaaagggagtgattctaaatctaagcaaccctcaca
acataatgctcctacagaaacaagtgacaaaacaaaagataatgtgacatcacggcctgcagatctgaaactagattctc
atagtgttgatattaagaataataaaaaccttgattctgttggtgggactaccaagagtgaacctgatgtgaaagtgaat
gttgtccctcctcgaccgagggcaagacatgtagctaaaattggtgcttataaagaaaaacgtgaagaagaacctatgga
tacttcacattcttcagatgatatacaaactaaaagacagagtactgggaatgtcctagatagaacaaagccgacaaata
aaacagaagggaagaaggaagaacagaaaagtgtggtagctccgccaagagcaagacatgttgttaaaatcactgctaaa
aaggaggagtctgatgttcgtgagcgatcaaaatctccgttacaatcaaagcctgttcctagtgcacggacacctgagag
tctttcaaaaactggtgctaagaatgacgaggattcaagtgcaaataaacattcaatgtcccctatgtataagtcatcta
ctactacaaaaacaccagagagcccccctcccttgccatcctctctcccacctactgtaaaaccttcaacaccctcatcc
ccaccccctcttccttcaaatttgcctcctcagcttaaatcatctcctctctcacccatcagtctgccctcatcaagggg
taaatcacctcccagaacagattcatcccattcaaacaaaaattctcaaatacatgaactaaactcaaaagaatctccaa
aggcaaaaccaagacatgcaaaaacagctgttgaaagtaaagcaaaagagaaaaatgattctgcatcttcaattgtcagt
ccaacaaaacaagatcaagaattgttaggtggactattgaaaaatttggctgacattcgacaaagaaagtcttcatcaga
atcaaatgataaatcaccattgtctcctactcagggcctgagttcaaaactgcaaaacattcaagaaagtaaagaaggta
gaagggatattaaaagcttagacattgatgctgaaaagaaaaaagatagagcaggaaaagctaaatcagacttcttgtct
ggaaaattatccgttttctctagcgaatctgaaagtgtcagtgatagacctaagactgagaaaaaagttaagtcagattt
caattcaaatgaggatgatgatattcctgcatggaaaaaagcattagaagaaagaaagaagaaaaacttaagaccaaagt
cagaggctgtattgaatgaagaatctcaagtaaatgagccggcatggaaaagtggtctgaataaaaagaatgcaaacaga
ccaaaatcaatggatatattgtctgagattgacaaagagaaagatcaaaagccagcatggcagcttgaagcagaaaagcg
aatggctgccaacgaaaaaaaatttgttgatccagagaaaaaccgaatagatcaaggtgtaaagaaaaatgagaaaacag
ataacagcaaaccgagaccttatactgcatatggggaacttgagagcaaaagtaaatcaccagtgtctggaaaggtaact
gacaatagtgaaagcaaggtaaagagcagaattcttccaactgctcctagtgacagtaaacaatcagagaccgaaaaaaa
gaaaatttctgtggacactaaatttagttttaacttgaatttcaaagacaaagaaaaggaaaaggaccctggtaaaccac
ccagaccaccaactagccctgctgcactgaaatcaaagataggaacagcagaagatgacaggtcttccatacactccccg
cccctcaggcccccggcacccaggtcaacagaggtcaagacattcggggatgtaaagagactcactcccagagaaattca
gaagcagttatcagaaattgaccatcgcctgactgacctagagataaggggaagaactctggaggattccatcagaaaag
gtttgtacctgagtgtatacagtcctatatatattctaagcttggcttga

Protein
Protein IDpfu_aug1.0_8519.1_38771.t1
Definition-
>pfu_aug1.0_8519.1_38771.t1
MADGYRDVEVRDMTSSWKDGLAFCAIIHRHRPDLIDYDALSKENIFDNNQLAFEVAEKELGIPALLDAPDMVAIRVPDKL
SVVTYVSQYYNYFCNKPQLGGPGVKKPNTLKRTQATPTGPDAKRQSLGPNDGTPNKDRQVSMGDKCAICHKKVYLLERHV
NEGQLYHRTCFRSSDNSPQRKINKRLDAMGDRESDEKKSLQDKKGEEPNFWKRRADAKKTESKSNGHVNSDADKGQVPNK
KHDSSGVLSSLVHNLKGSDSKSKQPSQHNAPTETSDKTKDNVTSRPADLKLDSHSVDIKNNKNLDSVGGTTKSEPDVKVN
VVPPRPRARHVAKIGAYKEKREEEPMDTSHSSDDIQTKRQSTGNVLDRTKPTNKTEGKKEEQKSVVAPPRARHVVKITAK
KEESDVRERSKSPLQSKPVPSARTPESLSKTGAKNDEDSSANKHSMSPMYKSSTTTKTPESPPPLPSSLPPTVKPSTPSS
PPPLPSNLPPQLKSSPLSPISLPSSRGKSPPRTDSSHSNKNSQIHELNSKESPKAKPRHAKTAVESKAKEKNDSASSIVS
PTKQDQELLGGLLKNLADIRQRKSSSESNDKSPLSPTQGLSSKLQNIQESKEGRRDIKSLDIDAEKKKDRAGKAKSDFLS
GKLSVFSSESESVSDRPKTEKKVKSDFNSNEDDDIPAWKKALEERKKKNLRPKSEAVLNEESQVNEPAWKSGLNKKNANR
PKSMDILSEIDKEKDQKPAWQLEAEKRMAANEKKFVDPEKNRIDQGVKKNEKTDNSKPRPYTAYGELESKSKSPVSGKVT
DNSESKVKSRILPTAPSDSKQSETEKKKISVDTKFSFNLNFKDKEKEKDPGKPPRPPTSPAALKSKIGTAEDDRSSIHSP
PLRPPAPRSTEVKTFGDVKRLTPREIQKQLSEIDHRLTDLEIRGRTLEDSIRKGLYLSVYSPIYILSLA

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