Gene
| Gene Model ID | pfu_aug1.0_852.1_65669 |
|---|---|
| Locus | scaffold852.1 : 5876 ... 26445 : - |
| To GenomeBrowser | scaffold852.1:5876..26445 |
| Genes list of scaffold | scaffold852.1 |
| Synonym | pfu_aug2.0_7.1_23203 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_852.1_65669.t1 | 1 | 1 | TFIID-18kDa | 7 | 85 | 1.0e-21 | 76.5 | 2.0e-25 | 3.0e-21 | 75.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_852.1_65669.t1 | gi|50540318|ref|NP_001002625.1| | transcription initiation protein SPT3 homolog [Danio rerio] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| 8-16cell | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_852.1_65669.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_852.1_65669.t1 atgatgcgaggaattgagcatggatttggtgactgtagaaaacccctattggattcagcagtactcatcgaagatatcgt caaacagcaaatgacgtcactgttgcaccagacttcagacattgcctccatgagaggaagcaggtttatcggattagaag atctgttattccttctgagaaaagacaaggtgaaattacgaaggttgctgagatatctacaaatcaaggacgagaaatcc caggttctgaagaacacgggcgtggacgaggtagaggatacaggggagggaacccccgggacgtggggacaatcctcgtg ggcaacagataaaagacggaggctcaaacaatgtcatgacttcttgtcaactatagacggaacaggtgaacttgttgctc tgctagaagatcagggagtagatgaagtcaaacaagaaagactactgagagcagaattacaatctagaaacatggatgcc aatcaatacatggaattcagtaatgccagacgtgtaagcctaggtaagagatataggtcacaaagatttagggaatggtt actacatggtgtgaatgtggacatcaagcccagtcagcaatctatcgagattttctcttacatggcatacgaaacaatag ctcagattgtagactttgccctgatagtaaaacaggacttgcgtgccatcagcggagatgtcatgatgaaagcccttcct cctgttactactaatatacaggacatgtctgtgatcaacccatccgctacatccagctctaaaccttcccctgggctcac atcaccgtctcaaagtccccctaccacgcccacatcagctggtctgtcatcttctacagggtcgttgggaggaagcagtg gggcatcaacatcaagtaaaaacaaagccaagaaaaggaagaagagttcctatggaagtagtatagatatgattacatca caagcgatccagccacaagaaattcacgaagccatacgaagatactcacagatgattggaccattctcctctgtagtgag aacaaacccatatcatttacccaagatgaacctggcctgctgctga |
|
Protein
| Protein ID | pfu_aug1.0_852.1_65669.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_852.1_65669.t1 MMRGIEHGFGDCRKPLLDSAVLIEDIVKQQMTSLLHQTSDIASMRGSRFIGLEDLLFLLRKDKVKLRRLLRYLQIKDEKS QVLKNTGVDEVEDTGEGTPGTWGQSSWATDKRRRLKQCHDFLSTIDGTGELVALLEDQGVDEVKQERLLRAELQSRNMDA NQYMEFSNARRVSLGKRYRSQRFREWLLHGVNVDIKPSQQSIEIFSYMAYETIAQIVDFALIVKQDLRAISGDVMMKALP PVTTNIQDMSVINPSATSSSKPSPGLTSPSQSPPTTPTSAGLSSSTGSLGGSSGASTSSKNKAKKRKKSSYGSSIDMITS QAIQPQEIHEAIRRYSQMIGPFSSVVRTNPYHLPKMNLACC |
|