Gene
| Gene Model ID | pfu_aug1.0_8552.1_38782 |
|---|---|
| Locus | scaffold8552.1 : 46351 ... 72925 : - |
| To GenomeBrowser | scaffold8552.1:46351..72925 |
| Genes list of scaffold | scaffold8552.1 |
| Synonym | pfu_aug2.0_671.1_04470 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8552.1_38782.t1 | 1 | 1 | A2M_N | 97 | 191 | 1.3e-20 | 73.4 | 1.6e-23 | 6.1e-20 | 71.3 |
| pfu_aug1.0_8552.1_38782.t1 | 1 | 1 | A2M_N_2 | 295 | 407 | 2.7e-12 | 46.6 | 7.2e-15 | 2.7e-11 | 43.4 |
| pfu_aug1.0_8552.1_38782.t1 | 1 | 1 | A2M | 454 | 538 | 3.8e-24 | 84.0 | 2.8e-27 | 1.0e-23 | 82.6 |
| pfu_aug1.0_8552.1_38782.t1 | 1 | 1 | A2M_recep | 591 | 630 | 9.4e-08 | 32.1 | 8.4e-11 | 3.1e-07 | 30.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_8552.1_38782.t1 | gi|13928544|dbj|BAB47146.1| | complement component C3 [Branchiostoma belcheri] | 6.0e-32 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_8552.1_38782.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8552.1_38782.t1 atggctccaagtaaactacgctacaacgttcctgaagttatttctatatctgtaacggagattagaaacctacctgtatt ggtaaggattcaagattatcctttgcggcaaaacacagtcttcgaaacatacgtgacagtcaatgaaggagtcacagtac gaatacatccgaacgatcttccggaaagtgacgaagatgaccgacaggtgtacttgaccctacagagcacggacccaagt ttgcctctgaatgacagtaccgtagttcctctaacaaaggttacaggatacatcttcatacaaaccgataaacctatcta cacaccagatcaagaagtaaagttcagagtaattccgttggacgatcagagattgccgacgtcggacccagtacagatag atgttgtgaacccacagggcgtggtcatccagcgatggatatcgacatggcaacagaaatttatctcacatgacttccag ctgcccgatattccggtacttggtaaaaactggacaattaagacacagtttacctcagatacgctccaaaatggatctgc atcatttgaagtggacatggcggaagtcggtaaaggtttagaaagtttctggttcccagatggagccaaacttcacatag aggcagaggtactagaaacgacctccggcagaaaggagcgagctatggacatgtctatagtatttgtagaacaacctttt gttctctcagcagacgacagccagaaattcttcaaaccaggactcacttatgagttgaagatgaaaaccaaccatccgga ctatacagacgagcaacaaactgaaattacatttgacaccgaggcaagcgtgtcatctagtggacaattcttaaaaatca catcaacagagatcatgtatggctcgtctattaccgaactacacgtcatgccaacattaggaacgagtcctgtcacctat agcgtattaatccagcctttgatgtcaccatacactcgcgtcatagctcactatttcctggaaaatcccactggtccgga aatcgtgtcagactccttgagaatccacctgccgctacgttttcaagcaggagagctgacattaagttcagaggaagacg tttatttacccggagattcatcgggagctaacattcatgttcgaggggctccgaacagcgttgtcggattcgttgcagta gatgaagctatttacttactcagtgagaaaggcatccttaacaaagaactggttgatttagatccggggaagatggcgaa agttggacagaaggagtacacattttccgatgttgacgacaatgatcagagaaccaaagtgagatccgacttcccggaat cctggatgtttgaggaagattatttggatcatactggcgacctcattaaaaacgtccaattaccagattccatcacgact cacagactccaagttttgtcaatatcccctgattatggaataagtatagctgacccaatcaccatagcaacgtacaaaga tttctttattgaccttgacctgccgtatagtattgttaggctagagcagacggaggtcagggccatcgtatataactatg gaagccaggcactagatgataccattattgcacttcaagccttgaccatgtataacatcaggacatatgccagagatctg gatcttcgtctaacattgcagacgacagtgaatgatacattccgccatgatatgactctgtcacaaggtgacatggaaat agagaaaagtgtagacaagataccaagtgacagggacctttgcttcaaatttagaacagtcaaagaatttgaagttgaga atctccaatctgcaaaaatagaagtatttgattactacaagtcagttgctcgaatcgaagtggctaatgtaatggtgtcg ggaaaccatcttatgatttcaactgttgtgcattccgcgataaaagcaggaccaggtaacatacgtgttggcgacgaact agtattttggatgaatctaagatgcacaacatctgtcagcgagggagaattttacattatctatggaaaggcacctattc aatatgtagatgaacaaggatttaaaaggtacagatactacctacaaggggatacggccataatgaaggattacgtacgt caacaatacgccaccacagcaacgttacgctactggagacgcttcctcaggagactagagaggtacatcaggagaagagg atgttcttga |
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Protein
| Protein ID | pfu_aug1.0_8552.1_38782.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8552.1_38782.t1 MAPSKLRYNVPEVISISVTEIRNLPVLVRIQDYPLRQNTVFETYVTVNEGVTVRIHPNDLPESDEDDRQVYLTLQSTDPS LPLNDSTVVPLTKVTGYIFIQTDKPIYTPDQEVKFRVIPLDDQRLPTSDPVQIDVVNPQGVVIQRWISTWQQKFISHDFQ LPDIPVLGKNWTIKTQFTSDTLQNGSASFEVDMAEVGKGLESFWFPDGAKLHIEAEVLETTSGRKERAMDMSIVFVEQPF VLSADDSQKFFKPGLTYELKMKTNHPDYTDEQQTEITFDTEASVSSSGQFLKITSTEIMYGSSITELHVMPTLGTSPVTY SVLIQPLMSPYTRVIAHYFLENPTGPEIVSDSLRIHLPLRFQAGELTLSSEEDVYLPGDSSGANIHVRGAPNSVVGFVAV DEAIYLLSEKGILNKELVDLDPGKMAKVGQKEYTFSDVDDNDQRTKVRSDFPESWMFEEDYLDHTGDLIKNVQLPDSITT HRLQVLSISPDYGISIADPITIATYKDFFIDLDLPYSIVRLEQTEVRAIVYNYGSQALDDTIIALQALTMYNIRTYARDL DLRLTLQTTVNDTFRHDMTLSQGDMEIEKSVDKIPSDRDLCFKFRTVKEFEVENLQSAKIEVFDYYKSVARIEVANVMVS GNHLMISTVVHSAIKAGPGNIRVGDELVFWMNLRCTTSVSEGEFYIIYGKAPIQYVDEQGFKRYRYYLQGDTAIMKDYVR QQYATTATLRYWRRFLRRLERYIRRRGCS |
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