Gene
| Gene Model ID | pfu_aug1.0_858.1_15272 |
|---|---|
| Locus | scaffold858.1 : 21476 ... 28774 : + |
| To GenomeBrowser | scaffold858.1:21476..28774 |
| Genes list of scaffold | scaffold858.1 |
| Synonym | pfu_aug2.0_374.1_14063 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_858.1_15272.t1 | 1 | 1 | RVT_1 | 645 | 802 | 2.6e-22 | 79.2 | 3.1e-25 | 5.8e-22 | 78.1 |
| pfu_aug1.0_858.1_15272.t1 | 1 | 1 | rve | 1232 | 1344 | 2.0e-25 | 89.2 | 3.0e-28 | 5.5e-25 | 87.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_858.1_15272.t1 | gi|317419154|emb|CBN81191.1| | Pol polyprotein [Dicentrarchus labrax] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_858.1_15272.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_858.1_15272.t1 atggatttgctgcgacaacagatgaaggaaatggaattaaaacataagatggacaccaaaccggcacctatttacgtacg atcggaacgtaaaataacgaaattagccggacgacctgttaaagacagcgatccagatgtagatgactggatcagcgata tgaaggagcatatatcaagtatcccaacaaatgaaggtaaaattgaatttatcctcgaccatttaaccggaaatgccaaa acggaagtccgacttcgtccaccagaaatgaaaaggactcctaaagaaatcttgaagatcatcgaagatacatataagac tcaggacactttagctcaattacgtcataagttttatgaacgaaatcaacaagagaacgagactctagaagcatattcat tggtactcatgaaacttatggataaaatttgcaagaaagagggggatgttactaataaggacaaaattctaatcgaaaag ttcattgacggtgtaagggagacacaactcaaaagagagctacggcgatttgctctagaaaattcctccatccctttctt cgagttccgcagaagaatgctcttgtgggtcgacgatcaacctcctgagttagaaaagacagcatctgtaaacaagcata tggtggaacagaaagccgtaaacgatgaaattatggctatgttacttaaacaacaagaactgttggaaaaacaacaacaa caaatcgaaatgttaaccaacctgacacaaaagacaagctaccgacagtttaatggtcgcggcagggtaaacagccgagg aagaactcgaggtcgcggatatgggagaggatatggacgcactccttcgttggaatttaaaccaacatgttatttttgcc acgaagaaggtcataagagaaacgaatgcccgaaacttcaatcgaaggatagaacacagaaaatagaactaagtgacaca aggaaatttctcagactcgttgctgcaaataatttacaaattccgtatcttggttatgcagaagtagacgttgaggtatg tggctgtacattttatggcgttgggttcctcgtagcgaaaggaaatacttcatcggacaaaaccgatggaatactaggtt gtaatattctacgacatatcaaaaacgtaatgaaagatggggacatgaaatatgacaatacagatcaggaaaacggatgg cgaactgttacgtcaactctggaactgtccgaaaaggattacaggataggtttcgtcaaagtagcaggacgatcagacgt gaaaatacctgccaattcgatgaaagtcgtaatcggatccacaaagcaaaataagaaaggcgaacagtatacagcggccg tacaagccatatatggatcgatgggctcactcccgaaaaacattttggttgtggacacactgggaaccgttgaatgtggg aaaatccctgttagaatcgtcaatattggcgaagaagacgtgtggctcaaacctaaaagccgactaggaactttacatca agtggatattgtaaggtcaactgatgacgaatacaaaattgatatacaacagaaagaggtcatagtcagtaaaattagta gaacacttgaagaccaagaggaagaaaactttcgatctccattaaactttaaactaggcgacgtaactctttccgatagc cagaaacagcagtttgaccgacttattgagaaacatcgtgaaagtttcattacaagtgatgatgacctgggatttacgga tacggtaaggcactcgattaagttacaagatgataccccagtccgtgttccacatcgtcgaatccctccacatcaaatcg acgaagtgaaacaacacattcgcaaattattagaccaaggaattattcgaaaaagcacaagcccatatgcatctgcagtt gtcatagctaggaaaaaggataagtcactacgtctatgcgttgactaccgagaattgaataagaaaaccataaaagatgc gtatccaattccgagaatcgatgaaacccttgatgtacttcatggagcgaaatattttagctcgattgacttagctcaag gctatcaccaggttgcgatggatgaggactcaatcgagaaaacagctttccgtgttggcaccggaggactttatgaatat ttgagaatgccatttggactttgcaatagtcccgcgacgtttcaacgtctaatggaagcatgtttttccgaggaaaattt tgacattctactcatatatctggacgatattctagtcttttcaaagacaattgatgaacatattgaacgtctggatgccg ttttctcgaaacttaaaaagcatggtctgaaaatgaaaccgtcaaaatgctgttttttcaacacctctgtgaagtacctt ggacatcttgtttcggcgaaaggaatctccaccgacccagataagacagaggcaataagaacatggcctattccgacatc tgaaaaggaacttaggtcatttttgggactcgccggttactatcgtcgattcgtcaaagacttttccaaaatagcaaagc cgctacatgccattactcaagatagcaaaaccaaaaagaagacaaaatctaataacagaccgtttagggacatgtggaat gcagaatgcgaaactgctttcaacgaattgaaaacgagacttatatcatcaccaatactgggctatccagattttaagag aacattcgtactagaagtagatgctagctttgaagggttaggtgccgtcctttcacaagatcaagaacaaggacatgtag tgattgcgtatgcttcacggacattacggccgacagagcgtaacatggacaactatagttctatgaagctagaactgtgt agactgtcgagcgtctgcatacgagaaaactttaaatctctattaggagccaagttcgttgtttttacggataataatcc gcttagttatctggagactgcgaagctcggggccacggaacaaagatgggctagccaacttgcgcaatttgattttgaag tcaaattccgatcaggaagggtaaaccgtaatgcggacgcattaagccggaaacctcgacagaagaatcaagatgaacag tgtgaatctgaaaccgtttttcagaaagtaattttgggctccaccttaatggatattcgcagcgaagatactaacttact gcatgcgcgtgtatgtcctatacaagcagaccccgtatgcgctacatctacgttaccagagtatgatagtgccgagatcg catcattacaagcatttgatccagttattagtcgagtattacattggatcaatggttcatcgaagcctacattaaaagac ttaaaggctgaaaataaaaatgtgaggaaactcctgaaacaaaaggaaaaactgcggatcgaggatggtgttctctacag agatattgagggtgagaccggaccagtaagacaagttgttctccctgaaacattaaaacagtgcgttttggagtctcttc ataatcatgccggacatcaaggtgtggaacgaacttcatcccttgttaaaaagcgatgctattggccaacaatgctgagc gacatagagcaatattgtaagaagtgtgaacggtgcatgattgcaaaggcaccagtaccaacagttaagccacctatagg taacttacttgcctaccaaccgcaagaaatattagcgatcgatttcacggtactagaaccagcgtcagatggaagagaaa atgtactcgtcatgactgacattttcactaagtacacccaagccgtaccgacaaaagatcaaaaggcaacaacggtcgca aaagtactgattagggaatggttcgtccgctttggaattccacgacgtattcacagcgatcaaggtcgaaactttgaaag tgcgattattcaggagctatgcaaattgtacgacatttcgaaaagtcgaactacaccgtatcacccagaaggcaacggtc aagttgaacgctacaaccgaactatgcataacattctccgaacgttatctccacagcagaagagaaaaatggccggaaca tttaccggagctcgtattcgcatacaatgcaactgtgcactcttcaaccggctatacgccttattacttaatgttcggaa gagaaccaacccttccagtagaccaccttcttggcgtagataa |
|
Protein
| Protein ID | pfu_aug1.0_858.1_15272.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_858.1_15272.t1 MDLLRQQMKEMELKHKMDTKPAPIYVRSERKITKLAGRPVKDSDPDVDDWISDMKEHISSIPTNEGKIEFILDHLTGNAK TEVRLRPPEMKRTPKEILKIIEDTYKTQDTLAQLRHKFYERNQQENETLEAYSLVLMKLMDKICKKEGDVTNKDKILIEK FIDGVRETQLKRELRRFALENSSIPFFEFRRRMLLWVDDQPPELEKTASVNKHMVEQKAVNDEIMAMLLKQQELLEKQQQ QIEMLTNLTQKTSYRQFNGRGRVNSRGRTRGRGYGRGYGRTPSLEFKPTCYFCHEEGHKRNECPKLQSKDRTQKIELSDT RKFLRLVAANNLQIPYLGYAEVDVEVCGCTFYGVGFLVAKGNTSSDKTDGILGCNILRHIKNVMKDGDMKYDNTDQENGW RTVTSTLELSEKDYRIGFVKVAGRSDVKIPANSMKVVIGSTKQNKKGEQYTAAVQAIYGSMGSLPKNILVVDTLGTVECG KIPVRIVNIGEEDVWLKPKSRLGTLHQVDIVRSTDDEYKIDIQQKEVIVSKISRTLEDQEEENFRSPLNFKLGDVTLSDS QKQQFDRLIEKHRESFITSDDDLGFTDTVRHSIKLQDDTPVRVPHRRIPPHQIDEVKQHIRKLLDQGIIRKSTSPYASAV VIARKKDKSLRLCVDYRELNKKTIKDAYPIPRIDETLDVLHGAKYFSSIDLAQGYHQVAMDEDSIEKTAFRVGTGGLYEY LRMPFGLCNSPATFQRLMEACFSEENFDILLIYLDDILVFSKTIDEHIERLDAVFSKLKKHGLKMKPSKCCFFNTSVKYL GHLVSAKGISTDPDKTEAIRTWPIPTSEKELRSFLGLAGYYRRFVKDFSKIAKPLHAITQDSKTKKKTKSNNRPFRDMWN AECETAFNELKTRLISSPILGYPDFKRTFVLEVDASFEGLGAVLSQDQEQGHVVIAYASRTLRPTERNMDNYSSMKLELC RLSSVCIRENFKSLLGAKFVVFTDNNPLSYLETAKLGATEQRWASQLAQFDFEVKFRSGRVNRNADALSRKPRQKNQDEQ CESETVFQKVILGSTLMDIRSEDTNLLHARVCPIQADPVCATSTLPEYDSAEIASLQAFDPVISRVLHWINGSSKPTLKD LKAENKNVRKLLKQKEKLRIEDGVLYRDIEGETGPVRQVVLPETLKQCVLESLHNHAGHQGVERTSSLVKKRCYWPTMLS DIEQYCKKCERCMIAKAPVPTVKPPIGNLLAYQPQEILAIDFTVLEPASDGRENVLVMTDIFTKYTQAVPTKDQKATTVA KVLIREWFVRFGIPRRIHSDQGRNFESAIIQELCKLYDISKSRTTPYHPEGNGQVERYNRTMHNILRTLSPQQKRKMAGT FTGARIRIQCNCALFNRLYALLLNVRKRTNPSSRPPSWRR |
|