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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_8584.1_38790
Locus scaffold8584.1 : 1245 ... 51735 : -
To GenomeBrowser scaffold8584.1:1245..51735
Genes list of scaffold scaffold8584.1
Synonym pfu_aug2.0_1284.1_14933

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_8584.1_38790.t1 2 1 DUF2870 75 102 1.3e-13 50.8 0.22 1600.0 -0.9
pfu_aug1.0_8584.1_38790.t1 2 2 DUF2870 157 192 1.3e-13 50.8 1.7e-17 1.3e-13 50.8

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_8584.1_38790.t1 gi|260790491|ref|XP_002590275.1| hypothetical protein BRAFLDRAFT_121345 [Branchiostoma floridae] 0.0

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
egg-4cell 1
8-16cell 1
egg-Dshape 1
trochophore 1
>Adult tissues
Dshape 1
maleGonad 1
mantle 1

Transcript
Transcript IDpfu_aug1.0_8584.1_38790.t1
Definition-
>pfu_aug1.0_8584.1_38790.t1
atgcttctctacatgctgcgagaccctgttttctcggaattggtggaaatggaagagcttgctaaacacggtataactct
gccaccgaatatgatgggtcttacagatgaacaggtcgaagaactgaagttaaaagatgaatgggaggataagtgtgtgc
cacagggaggattcaaggaatgtaaagaccagataggcaggaggaatggaaaagctcccaaagaaaaaatggctgaactc
ctcaataaaactgtaaaggaagcaaaggatatgatctcaaaaaaaaaggtgcaagctgagcagtatgttacacaatccag
cgtgaaggaggcactggatattttgagaggtgccgtcatgattgtttatcccatgaatttaccaccccacgatccaatca
gaatggaaattgaaaatacagaggacttagcaggcacgcaggcatcactagaggtaataatggaagatgaggcctcactt
tggttctgtgggaaagaaatgcagagaggaaaaaaactcaaagaccatgtcggcaaaaatgagaaaactaaagtcattgc
aaagttacaaaagaattactatctcaagacagaatttcataaaggttgtcacctacggattgctacggatagccactggt
tcgaaaaggagtaa

Protein
Protein IDpfu_aug1.0_8584.1_38790.t1
Definition-
>pfu_aug1.0_8584.1_38790.t1
MLLYMLRDPVFSELVEMEELAKHGITLPPNMMGLTDEQVEELKLKDEWEDKCVPQGGFKECKDQIGRRNGKAPKEKMAEL
LNKTVKEAKDMISKKKVQAEQYVTQSSVKEALDILRGAVMIVYPMNLPPHDPIRMEIENTEDLAGTQASLEVIMEDEASL
WFCGKEMQRGKKLKDHVGKNEKTKVIAKLQKNYYLKTEFHKGCHLRIATDSHWFEKE

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