Gene
| Gene Model ID | pfu_aug1.0_8584.1_38790 |
|---|---|
| Locus | scaffold8584.1 : 1245 ... 51735 : - |
| To GenomeBrowser | scaffold8584.1:1245..51735 |
| Genes list of scaffold | scaffold8584.1 |
| Synonym | pfu_aug2.0_1284.1_14933 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8584.1_38790.t1 | 2 | 1 | DUF2870 | 75 | 102 | 1.3e-13 | 50.8 | 0.22 | 1600.0 | -0.9 |
| pfu_aug1.0_8584.1_38790.t1 | 2 | 2 | DUF2870 | 157 | 192 | 1.3e-13 | 50.8 | 1.7e-17 | 1.3e-13 | 50.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_8584.1_38790.t1 | gi|260790491|ref|XP_002590275.1| | hypothetical protein BRAFLDRAFT_121345 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_8584.1_38790.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8584.1_38790.t1 atgcttctctacatgctgcgagaccctgttttctcggaattggtggaaatggaagagcttgctaaacacggtataactct gccaccgaatatgatgggtcttacagatgaacaggtcgaagaactgaagttaaaagatgaatgggaggataagtgtgtgc cacagggaggattcaaggaatgtaaagaccagataggcaggaggaatggaaaagctcccaaagaaaaaatggctgaactc ctcaataaaactgtaaaggaagcaaaggatatgatctcaaaaaaaaaggtgcaagctgagcagtatgttacacaatccag cgtgaaggaggcactggatattttgagaggtgccgtcatgattgtttatcccatgaatttaccaccccacgatccaatca gaatggaaattgaaaatacagaggacttagcaggcacgcaggcatcactagaggtaataatggaagatgaggcctcactt tggttctgtgggaaagaaatgcagagaggaaaaaaactcaaagaccatgtcggcaaaaatgagaaaactaaagtcattgc aaagttacaaaagaattactatctcaagacagaatttcataaaggttgtcacctacggattgctacggatagccactggt tcgaaaaggagtaa |
|
Protein
| Protein ID | pfu_aug1.0_8584.1_38790.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8584.1_38790.t1 MLLYMLRDPVFSELVEMEELAKHGITLPPNMMGLTDEQVEELKLKDEWEDKCVPQGGFKECKDQIGRRNGKAPKEKMAEL LNKTVKEAKDMISKKKVQAEQYVTQSSVKEALDILRGAVMIVYPMNLPPHDPIRMEIENTEDLAGTQASLEVIMEDEASL WFCGKEMQRGKKLKDHVGKNEKTKVIAKLQKNYYLKTEFHKGCHLRIATDSHWFEKE |
|