Gene
Gene Model ID | pfu_aug1.0_8584.1_38790 |
---|---|
Locus | scaffold8584.1 : 1245 ... 51735 : - |
To GenomeBrowser | scaffold8584.1:1245..51735 |
Genes list of scaffold | scaffold8584.1 |
Synonym | pfu_aug2.0_1284.1_14933 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_8584.1_38790.t1 | 2 | 1 | DUF2870 | 75 | 102 | 1.3e-13 | 50.8 | 0.22 | 1600.0 | -0.9 |
pfu_aug1.0_8584.1_38790.t1 | 2 | 2 | DUF2870 | 157 | 192 | 1.3e-13 | 50.8 | 1.7e-17 | 1.3e-13 | 50.8 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_8584.1_38790.t1 | gi|260790491|ref|XP_002590275.1| | hypothetical protein BRAFLDRAFT_121345 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-4cell | 1 |
8-16cell | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
maleGonad | 1 |
mantle | 1 |
Transcript
Transcript ID | pfu_aug1.0_8584.1_38790.t1 |
---|---|
Definition | - |
>pfu_aug1.0_8584.1_38790.t1 atgcttctctacatgctgcgagaccctgttttctcggaattggtggaaatggaagagcttgctaaacacggtataactct gccaccgaatatgatgggtcttacagatgaacaggtcgaagaactgaagttaaaagatgaatgggaggataagtgtgtgc cacagggaggattcaaggaatgtaaagaccagataggcaggaggaatggaaaagctcccaaagaaaaaatggctgaactc ctcaataaaactgtaaaggaagcaaaggatatgatctcaaaaaaaaaggtgcaagctgagcagtatgttacacaatccag cgtgaaggaggcactggatattttgagaggtgccgtcatgattgtttatcccatgaatttaccaccccacgatccaatca gaatggaaattgaaaatacagaggacttagcaggcacgcaggcatcactagaggtaataatggaagatgaggcctcactt tggttctgtgggaaagaaatgcagagaggaaaaaaactcaaagaccatgtcggcaaaaatgagaaaactaaagtcattgc aaagttacaaaagaattactatctcaagacagaatttcataaaggttgtcacctacggattgctacggatagccactggt tcgaaaaggagtaa |
Protein
Protein ID | pfu_aug1.0_8584.1_38790.t1 |
---|---|
Definition | - |
>pfu_aug1.0_8584.1_38790.t1 MLLYMLRDPVFSELVEMEELAKHGITLPPNMMGLTDEQVEELKLKDEWEDKCVPQGGFKECKDQIGRRNGKAPKEKMAEL LNKTVKEAKDMISKKKVQAEQYVTQSSVKEALDILRGAVMIVYPMNLPPHDPIRMEIENTEDLAGTQASLEVIMEDEASL WFCGKEMQRGKKLKDHVGKNEKTKVIAKLQKNYYLKTEFHKGCHLRIATDSHWFEKE |