Gene
| Gene Model ID | pfu_aug1.0_86513.1_42174 |
|---|---|
| Locus | scaffold86513.1 : 732 ... 2068 : + |
| To GenomeBrowser | scaffold86513.1:732..2068 |
| Genes list of scaffold | scaffold86513.1 |
| Synonym | pfu_aug2.0_35.1_16760 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | actin |
| Description | Actin partial sequence. BLAST top hit to EU234531(Crassostrea ariakensis). The amino acid sequence lacks N-terminal region of 44 amino acids compared with other actin sequences. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_86513.1_42174.t1 | 1 | 1 | Actin | 7 | 332 | 0.0 | 473.5 | 0.0 | 0.0 | 473.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_86513.1_42174.t1 | gi|159507454|gb|ABW97741.1| | beta-actin [Crassostrea ariakensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_86513.1_42174.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_86513.1_42174.t1 atggttggtatgggacagaaggacagctatgtaggagacgaggcccagagtaagagaggtatcctcaccctcaaataccc cattgaacacggtattgtcacaaactgggacgatatggagaagatctggcatcataccttctacaatgaactccgtgtgg cccccgaggaacaccctgttctcctgaccgaggctccactcaacccaaaggcaaacagagaaaagatgacacagatcatg tttgaaaccttcaactctcccgccatgtacgtagctatccaggccgtgctctcactgtacgcttccggtcgtactacagg tatcgtactggactctggggatggggtatcacatacagtacctatctacgagggatacgcccttccccacgccattttga gattagatcttgccggacgtgatctcacagattaccttatgaagatcctcacagagcgtggctactcattcaccaccaca gctgagagagaaatcgtcagagacattaaagaaaaattgtgctatgttgccttagactttgaacaagaaatggctaccgc cgcatcgtcatcttctctagagaagagttacgaacttcccgacggtcaggtcatcaccattggtaacgaaaggttcaggg cccctgaggcaatgttccagccatctttcctcggtatggaatcttcgggtatacatgaaacaacatacaacagtataatg aaatgtgacgtagacattcgtaaagacttgtacgcaaataccgttttatctggtggttctaccatgtacccaggtattgc tgaccgtatgcagaaagaaatcacagctcttgctccatcaacaatgaaaatcaagatcatagctccaccagagaggaaat actcggtgtggattggtggatctatcctcgcttctctctccaccttccagcagatgtggatcagcaaacaggaatacgac gagtccggtccatccatcgtccacaggaagtgcttttaa |
|
Protein
| Protein ID | pfu_aug1.0_86513.1_42174.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_86513.1_42174.t1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM FETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTT AEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRAPEAMFQPSFLGMESSGIHETTYNSIM KCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYD ESGPSIVHRKCF |
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