Gene
| Gene Model ID | pfu_aug1.0_87.1_21977 |
|---|---|
| Locus | scaffold87.1 : 55886 ... 73194 : + |
| To GenomeBrowser | scaffold87.1:55886..73194 |
| Genes list of scaffold | scaffold87.1 |
| Synonym | pfu_aug2.0_175.1_17072 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_87.1_21977.t1 | 2 | 1 | BicD | 15 | 70 | 0.0 | 682.4 | 0.19 | 930.0 | -2.2 |
| pfu_aug1.0_87.1_21977.t1 | 2 | 2 | BicD | 78 | 769 | 0.0 | 682.4 | 0.0 | 0.0 | 682.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_87.1_21977.t1 | gi|348562045|ref|XP_003466821.1| | PREDICTED: protein bicaudal D homolog 1-like isoform X1 [Cavia porcellus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| adductorMuscle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_87.1_21977.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_87.1_21977.t1 atgtcagacccaacaagcggtacacaatctgtcgacgatctgcgtcgggaaatagagaggttacagacagagttagcgga aacttctcaagagaaggtgcaggccgcagagtacggacttgcagttcttgaggaaaaacaacagcttcagcagcagatcg acgaacttgaagtacaattagatacagttaaacaagagttagaatgtgccaaagaggcccttaacaagcatcaggacacc tttcgtaagcagcagaaaagtggaatacatcatgaggacaccttccttcaggaagctgcttcaagggaagaaagttataa gtccatcatcacagaaaatgaatcagaactgaaaatgtgcaggcaggcactcgaaagaatcagtgccgaaaacgaacgtc tgaacgctgccgttcatgaacttcaacaacacaatgaccaactggaagatcagagacgtcagtacaaaaatgaaatcaga gagtttaaagtgagggaaaacagaaacttagccgattatacagaacttgaagacgaaaatataggcctgcagaagacggt ttcccaactcaaacaaagccaagttgagtttgaggggatgaaacatgaaattaaacgtctgcaagaggacgcagacgacc tcaacattcaacttgaagacgctttaaatttgaagaaaattgtggacaaaaattacgaagaggcaattactgcacttcag catgagcgcgaacagaaacatgccttaaagaaagaacttgaccagcggctgacgcaggagtcgatgtttaatcttagtaa cctcgcacactacggtggactaacagacgcaatgcctcaggcaaacaatggggtcggccaagattcaggggacgagggag atgaaaataaccctgctctacggagggtagaagcagatttcaaacacgatgaaacaaaatctccggtcaaaccaggtcca ggaaaagttaatgacattcttagtgaaattcaagagaatgaggtgaaaaaattggaacaattgcttgagcagagtgaaca tgaaaaatccgaacttcagtgtgctctagatgaagcacaaaagcttattgaagaaactcagaaggaccttgttgaacaga agaaacgtgcagatcagcttaaagcgcatatctcgtctgtgttaacttctgaagaatctcaattagcagatatgaacgat gacgatgagaaaatcgacaagttaattgaaaatgaaaacgatcctgacaaaagagctctattagaacttaggaaaaatct caggtcaaacgagaagaaatactcaactgcattgaaagaaattagcaatttacataatgaaatcagtcgtctgcaagaaa aaagtcacggaaaaactggtgataaggaaatcgatgatgcattagatgacttgaaaaagaaatgcaataattatgaaaat gttattaaagaattagagaaggacttgaaagctatgaccttggctgctggagaggcacaaggcggactcactacaactca ggatgagttagtgcgagttaccgaggaattggctcaactttatcacttagtgtgcgaggtgaatggagaaacgccgagcc gtgttatgctggaccatgtcaaggccgcaacacagctctcaaggacagagagggagagcagtgaggagaaagacagcgac aaatcggaaaaagctggggacgaatcagagaaaccaaagactcccaagtccaaaaaatccaaatcaaaatccagtaaaga ggtgtcaaataacgatattaaaggagacccgatctcatgctacaaacttacggaaacaatcatagatcaagtgaaatatt tacgacgcgccgtggaacacttgatggaagtgtcgcgaaacacgactgatgacaatgaaaatgctgatgtgcaggaattg caagaacagatagtgaaactcaaagcaatgttgtccactaaacgcgaacagatcgcaacgttgcgcagtgttctcaaagc gaataaatcgacggccgaaatcgctctagccaatttaaaacagaagtatgagaacgagaaagttatagtcaccgagacta tgatgaagttgagaaacgaactgaaggcgctgaaggaagatgccgcaacgtttgcatctctcagagccatgtttgcgcaa cgttgcgatgaatatgtgactcaacttgacgagcaacagcgtcaacttatcagtgcagaggaggaaaagaaaactctgaa ctccttactcaggatggccatccaacaaaagctgaccttgactcagcggttggaggatcttgaatttgaccgcgagagga ggaacatgaggcgccaaggaggaggaggcggcggaggagggggaggaagaaataagatgggggcttccaaagtaagtcac aactacaactctaatccatatcatgaggattatggtcgccatgggtcgggcaggtcccactattacaaccgcagggacta ttag |
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Protein
| Protein ID | pfu_aug1.0_87.1_21977.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_87.1_21977.t1 MSDPTSGTQSVDDLRREIERLQTELAETSQEKVQAAEYGLAVLEEKQQLQQQIDELEVQLDTVKQELECAKEALNKHQDT FRKQQKSGIHHEDTFLQEAASREESYKSIITENESELKMCRQALERISAENERLNAAVHELQQHNDQLEDQRRQYKNEIR EFKVRENRNLADYTELEDENIGLQKTVSQLKQSQVEFEGMKHEIKRLQEDADDLNIQLEDALNLKKIVDKNYEEAITALQ HEREQKHALKKELDQRLTQESMFNLSNLAHYGGLTDAMPQANNGVGQDSGDEGDENNPALRRVEADFKHDETKSPVKPGP GKVNDILSEIQENEVKKLEQLLEQSEHEKSELQCALDEAQKLIEETQKDLVEQKKRADQLKAHISSVLTSEESQLADMND DDEKIDKLIENENDPDKRALLELRKNLRSNEKKYSTALKEISNLHNEISRLQEKSHGKTGDKEIDDALDDLKKKCNNYEN VIKELEKDLKAMTLAAGEAQGGLTTTQDELVRVTEELAQLYHLVCEVNGETPSRVMLDHVKAATQLSRTERESSEEKDSD KSEKAGDESEKPKTPKSKKSKSKSSKEVSNNDIKGDPISCYKLTETIIDQVKYLRRAVEHLMEVSRNTTDDNENADVQEL QEQIVKLKAMLSTKREQIATLRSVLKANKSTAEIALANLKQKYENEKVIVTETMMKLRNELKALKEDAATFASLRAMFAQ RCDEYVTQLDEQQRQLISAEEEKKTLNSLLRMAIQQKLTLTQRLEDLEFDRERRNMRRQGGGGGGGGGGRNKMGASKVSH NYNSNPYHEDYGRHGSGRSHYYNRRDY |
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