Gene
| Gene Model ID | pfu_aug1.0_87126.1_42186 |
|---|---|
| Locus | scaffold87126.1 : 1 ... 1965 : - |
| To GenomeBrowser | scaffold87126.1:1..1965 |
| Genes list of scaffold | scaffold87126.1 |
| Synonym | pfu_aug2.0_802.1_07898 |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | frizzled-1/2/7 |
| Description | NCBI BLASTP hit to ref|NP_001079207.1| [Xenopus laevis] |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_87126.1_42186.t1 | 1 | 1 | Fz | 33 | 138 | 3.5e-34 | 117.6 | 8.6e-38 | 6.4e-34 | 116.7 |
| pfu_aug1.0_87126.1_42186.t1 | 1 | 1 | Frizzled | 230 | 549 | 0.0 | 463.4 | 0.0 | 0.0 | 463.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_87126.1_42186.t1 | gi|344268671|ref|XP_003406180.1| | PREDICTED: frizzled-7 [Loxodonta africana] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_87126.1_42186.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_87126.1_42186.t1 atggagagaggcggatgtacgtgtttgtttataattttcaatttactggtgtatgtttatggacaagcgcccgggctggt tccgaagcatggaaagtgtgaacctatttcgattcctttatgtaaagacattccttacaaccaaacgattatgccgaatt tactcaatcaccaaaagcaagacgacgccggtttggaagtgcaccagttctttcccttagtgaaggtacagtgcagtcct cagctgaaattcttcttgtgtacgatgtacgttcctgtttgtacagtattagaggaagcgattccgccttgtcgatcgct ctgtaaccaagccaggcacggctgcgaaagtttgatgaacaaatttggatttcagtggccggacagtttgaagtgtgatg agtttccggcatctggattatgcgtcggtgaaaacaacaccgacccggcggttgatgcaacggctaaaccaggaaatagc ggtagtggtggcggagactatggcggttataatcctgattttaataacattggttacatcccaggtgtaacaaaagtgaa tgaatccgtatttgggggaaatccccttccggcagaatgtccgaaaagcttacgtgtggatcctggatttgagtatcgct tgaaagttggtcgtacaatttaccaagactgtggtgcaccttgcaatatgtattttactcccgataaactggaatttgca cgcttatggattggaatttggtcgtgtatctgtcttggatctactctatttactgtccttacgttcttaatagacatgac gagattccgttaccctgaacggccgattatatttttgtctggatgttactttatggttgccctagcatacataatcggct tttcgttggataaggaccgtgttgcttgtcatagatttgaagatcccaagaaagtattaatggtgtcacaagggacgaag aaggaatggtgcaccattttatttatgacgacatactttttcagcatggcctcctctatttggtgggtcattttgtcctt gacctggtttttagcagctgggatgaaatggggtcacgaggctattgaagctaattcccagtacttccatttagcagcat gggccgtacctgccataaaaacaattgcgattttagcaatgggccaagttgacggagacgacttaagtggaatatgcttt acaggaattttcgacgtcgattcgttaagaggatttgtacttgccccacttgtggtatatttactaattggtacctcatt tttacttgctggatttatttcactcttcaaaatccgaaccataatgaaaagtgacggcacaaaaaccgataaattggaga aacttatggttcgtatcggaatattctcagtactctatactgtgcctgctaccatagtaatagcgtgttacttctatgaa caagctaccagagaccagtgggttttatcctggttttcgcggaagtgtcatattaacaaagacatcgtatgtccacccga cgcatatagcctaaaagacttggacaaaagtccggaaccagaatttaacgtttttatgattaagtaccttatgactgtaa tagtaggaattacttccggggtctggatctggacagggaaaactctcaactc |
|
Protein
| Protein ID | pfu_aug1.0_87126.1_42186.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_87126.1_42186.t1 MERGGCTCLFIIFNLLVYVYGQAPGLVPKHGKCEPISIPLCKDIPYNQTIMPNLLNHQKQDDAGLEVHQFFPLVKVQCSP QLKFFLCTMYVPVCTVLEEAIPPCRSLCNQARHGCESLMNKFGFQWPDSLKCDEFPASGLCVGENNTDPAVDATAKPGNS GSGGGDYGGYNPDFNNIGYIPGVTKVNESVFGGNPLPAECPKSLRVDPGFEYRLKVGRTIYQDCGAPCNMYFTPDKLEFA RLWIGIWSCICLGSTLFTVLTFLIDMTRFRYPERPIIFLSGCYFMVALAYIIGFSLDKDRVACHRFEDPKKVLMVSQGTK KEWCTILFMTTYFFSMASSIWWVILSLTWFLAAGMKWGHEAIEANSQYFHLAAWAVPAIKTIAILAMGQVDGDDLSGICF TGIFDVDSLRGFVLAPLVVYLLIGTSFLLAGFISLFKIRTIMKSDGTKTDKLEKLMVRIGIFSVLYTVPATIVIACYFYE QATRDQWVLSWFSRKCHINKDIVCPPDAYSLKDLDKSPEPEFNVFMIKYLMTVIVGITSGVWIWTGKTLN |
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