Gene
| Gene Model ID | pfu_aug1.0_8757.1_17372 |
|---|---|
| Locus | scaffold8757.1 : 9396 ... 15585 : + |
| To GenomeBrowser | scaffold8757.1:9396..15585 |
| Genes list of scaffold | scaffold8757.1 |
| Synonym | pfu_aug2.0_107.1_23470 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8757.1_17372.t1 | 1 | 1 | TPMT | 2 | 137 | 7.8e-27 | 94.1 | 5.7e-31 | 8.4e-27 | 94.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_8757.1_17372.t1 | gi|260793607|ref|XP_002591803.1| | hypothetical protein BRAFLDRAFT_83591 [Branchiostoma floridae] | 5.0e-26 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| mantle | 2 |
Transcript
| Transcript ID | pfu_aug1.0_8757.1_17372.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8757.1_17372.t1 atggacaaatctaggttggcagagcagggtcatgaaatcattggacttgaagcagtcgaaaaaggatgcagagaattttt tgtggagcagaaaattccatattctgttaaggatttgcaaaattgcaaaggcaaaatattcaaggctactgatgataaga aaatacagttgtattgctgcgattttttcgaccttgaaagattgtcattagggacatttgattgtatatgggacagggga tcttttgttgctgttgccgtaaaggaaagaaaaaggtacagtaataaaatgaccccgttgatgaaaaaagatacgaagta tttactggattgtttcaaagtagacaacggtatttttggaggcccacccttcaattgtgaaagaaaagatgtcgaggaaa atttcgcacaaaatcgataa |
|
Protein
| Protein ID | pfu_aug1.0_8757.1_17372.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8757.1_17372.t1 MDKSRLAEQGHEIIGLEAVEKGCREFFVEQKIPYSVKDLQNCKGKIFKATDDKKIQLYCCDFFDLERLSLGTFDCIWDRG SFVAVAVKERKRYSNKMTPLMKKDTKYLLDCFKVDNGIFGGPPFNCERKDVEENFAQNR |
|