Gene
| Gene Model ID | pfu_aug1.0_8758.1_53226 |
|---|---|
| Locus | scaffold8758.1 : 166 ... 29917 : + |
| To GenomeBrowser | scaffold8758.1:166..29917 |
| Genes list of scaffold | scaffold8758.1 |
| Synonym | pfu_aug2.0_109.1_30214 |
Manual annotation
| Study field | other |
|---|---|
| Gene name | hypothetical protein |
| Description | N-terminus of gene is ref|XP_002598501.1| hypothetical protein BRAFLDRAFT_66878 [Branchiostoma floridae]C-terminus of gene is homology to ref|XP_792610.2| PREDICTED: similar to endonuclease/reverse transcriptase [Strongylocentrotus purpuratus |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8758.1_53226.t1 | 1 | 1 | GPS | 38 | 83 | 2.5e-13 | 49.8 | 9.3e-17 | 4.6e-13 | 49.0 |
| pfu_aug1.0_8758.1_53226.t1 | 1 | 1 | 7tm_2 | 100 | 305 | 4.5e-33 | 114.3 | 1.4e-36 | 6.8e-33 | 113.7 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_8758.1_53226.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8758.1_53226.t1 atgtctaacggtaaaatagcagcggctacgctccagatagacaacgttaccgtcacaaacctgggtgactacaccgtcaa aacttacttcaaaccttatatggcaaccaaagagccggtatgcgggttctggaactacaccatcaatgataattccggag ggtggtccacagaggggtgtgtccttgtagacctacaggacgggcggtatatctgtgagtgtaaccacctcacaaacttc gccattttaattgatgctggtggtcagcaagaccctatagacgagggtaacaagctggccctgtctatcatcaccattat aggtctatcactgtccatcaccggactcacccttactgtggtatcatttatactcttcaaacagatgcgacaggggcgtg gtcagaagaccttatttaacctggccatggccctgctggcttctatcatagtgttcctagcaggaatagaacggacagag aactatgcagggtgcatcgtggtcgccgccctcctacactactttatactggtatcgtttgcctggatgctggtggaggg agtgcttcagtacctcagatttgtgaaagtactggggacatatatacccaacttcatgttaaaggcgggagtaccagcct ggggtataccactgattccagtaattatagtattggccgtggattatgatatgtacagcggtggagacctatactgctgg atgtcgaccacgcctttatattttgctttcctcctccccgtgggtttgatcatcatcatcaactttatcgtcttcttcat ggttctcaataacatcttacgtcgtcccaaaggactgcagtccaaccaatcagatcgcaagaaagctatgatcaatctca gggcatcagtatcagtggtcgttattttggttgcaaaggatacaacgaaatctttaaaagtttacgccggacgacgcgct atgacaatagctcacttgagcttcgctcggatcatggcgtttgttgtgaaccctgacttcatcgaggagcaagctttcgc tcacctgaacagttcccatacaggagacataggtaaactgaacaaacaggaaatggcgcgtgttcgagaagccatatcca agacaacgaaacattacctggatgttatacacaagttagaggcaggtaaaacacctgaagcgtgtttgtcacatttagag cctggtcacatcgacctcatcaagaaatctatggaaattcagacctatgagatgaccttgacacacaacaatgaggtgga gtttaccttccagggtgagaccttgtcatacccccctaccctgccctacaacaccgctgaggacgctgaccaggcgggga cattccaaatggtcagcattattatagaaagcatcactctgatccttaatatgattggcatatcggtccctggcagtgtc ctgaggaacaccaaggttatcaggaaggtcacagagatcctgagtaagaatccggtgctcaagagcatggtaggctacat ggtcagcgcatccaaagatggccgacttaaggacatagtcgtgcagatgtttaaggtggtcaaggtgctatggaagggag ggcttcggtctggacacattaagggactcttggcagccccaaaacctctgtctgaaaaagtgcctccacttgaaaagtac tctggctacgcgcctgtctccaacaaggccactacagcaaagcacacccgcaaaggacagaatcaaataacgaacacacc tcaaaacgatcagcttcgtcgacctatcagaagactgatttatctttggtctaaggctgacacagatgccatcaactctg accttatcaaatcggctaccatctttaaacagcacaaagacaacaaatcatctgtagacgttatgtggaaagactttaaa gttgtgtgtactaaatctatcaacgcacatgtaccatctaaatatacatccaccagattcaaccagccgtggtgtgatag gaacataaagaatttaagcagaaaaaagaagcgtgctcataggaaggctcgaaaaacaaacacaaagagagactgggaca gatatcaagaactacaacgtaataacagaaaggaatgtaggagatcatataacaggtacatcaataatatgcttggtgaa gaaggcacaacaaataagaagctgtactcatacataaagagtaaaagatgtgacagctctggtgtctccccattacgcag tgatggaagcctgcattcaaattctacagacaaagcagagatcctaaaccaacagttttcctcagttttcaacactgaat caatagacaacataccagatcttggaccatctccattttcatcagtaaacaacatcacagtgacagaaccaggggtactc aaactcctaaaaaaccttaacccccacaaggccagtggtccagacaacatctcatcaagattcctccgaaccatggctac aacactctcaccaatcctaactatcatcttccaggcatcactagaccaagaaaaagtgccagatgactggaaatcagcac atgtaacaccactattcaagaagggggataaagcaaaggcatcaaattatagaccagtttcattgacatccgtgtgctga gaggaaaagatgcggccggaccgggaatcgaaccagagtcctgctatcagggcagatgctcttaccaactga |
|
Protein
| Protein ID | pfu_aug1.0_8758.1_53226.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8758.1_53226.t1 MSNGKIAAATLQIDNVTVTNLGDYTVKTYFKPYMATKEPVCGFWNYTINDNSGGWSTEGCVLVDLQDGRYICECNHLTNF AILIDAGGQQDPIDEGNKLALSIITIIGLSLSITGLTLTVVSFILFKQMRQGRGQKTLFNLAMALLASIIVFLAGIERTE NYAGCIVVAALLHYFILVSFAWMLVEGVLQYLRFVKVLGTYIPNFMLKAGVPAWGIPLIPVIIVLAVDYDMYSGGDLYCW MSTTPLYFAFLLPVGLIIIINFIVFFMVLNNILRRPKGLQSNQSDRKKAMINLRASVSVVVILVAKDTTKSLKVYAGRRA MTIAHLSFARIMAFVVNPDFIEEQAFAHLNSSHTGDIGKLNKQEMARVREAISKTTKHYLDVIHKLEAGKTPEACLSHLE PGHIDLIKKSMEIQTYEMTLTHNNEVEFTFQGETLSYPPTLPYNTAEDADQAGTFQMVSIIIESITLILNMIGISVPGSV LRNTKVIRKVTEILSKNPVLKSMVGYMVSASKDGRLKDIVVQMFKVVKVLWKGGLRSGHIKGLLAAPKPLSEKVPPLEKY SGYAPVSNKATTAKHTRKGQNQITNTPQNDQLRRPIRRLIYLWSKADTDAINSDLIKSATIFKQHKDNKSSVDVMWKDFK VVCTKSINAHVPSKYTSTRFNQPWCDRNIKNLSRKKKRAHRKARKTNTKRDWDRYQELQRNNRKECRRSYNRYINNMLGE EGTTNKKLYSYIKSKRCDSSGVSPLRSDGSLHSNSTDKAEILNQQFSSVFNTESIDNIPDLGPSPFSSVNNITVTEPGVL KLLKNLNPHKASGPDNISSRFLRTMATTLSPILTIIFQASLDQEKVPDDWKSAHVTPLFKKGDKAKASNYRPVSLTSVCX EEKMRPDRESNQSPAIRADALTN |
|