Gene
| Gene Model ID | pfu_aug1.0_8765.1_24474 |
|---|---|
| Locus | scaffold8765.1 : 15934 ... 27105 : - |
| To GenomeBrowser | scaffold8765.1:15934..27105 |
| Genes list of scaffold | scaffold8765.1 |
| Synonym | pfu_aug2.0_90.1_00213 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8765.1_24474.t1 | 3 | 1 | DEAD | 9 | 59 | 2.0e-10 | 40.4 | 1.1e-13 | 8.5e-10 | 38.3 |
| pfu_aug1.0_8765.1_24474.t1 | 3 | 2 | DEAD | 152 | 198 | 2.0e-10 | 40.4 | 0.033 | 250.0 | 1.0 |
| pfu_aug1.0_8765.1_24474.t1 | 3 | 3 | DEAD | 273 | 324 | 2.0e-10 | 40.4 | 0.26 | 1900.0 | -1.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_8765.1_24474.t1 | gi|260790599|ref|XP_002590329.1| | hypothetical protein BRAFLDRAFT_279393 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| adductorMuscle | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_8765.1_24474.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8765.1_24474.t1 atggatgaaaccattaacttcagggcagactcactccaaatactagttttagatgaggcagacaggatactggatatggg gtttgctaaggagatgaatgccataatagagaaccttcctaacaccagacaaactttacttttctcagccacacaaacaa agtcagtgaaggatttagctcgccttagtttaaaagatccagtgtatgtgtcagttcatgagaattcagaatatagcact cctgtccaactagagcagaactatatagtatgtgaactccatgacaagatgaacatgctgtggtccttcatcaaaaatca tctaaaaagcaaagtcctcgctttctttacaagttgtaaacagagatatatccattttacagataagtgtatgcattatc gagaacgagggagggcgaaatcttgcaactttggtgattccgaagagagaatgatacgagacaaaatagtattctctacg agtggcaaagtacaacaacttctccttcgcgaggacaacctcaacttgcaacgagcaatcaaaatatgccaatcatatga acaagctaataagcaagcacaagctatgcgtgaagatcaaggtcaagtacacaaaatcacgaaacatcagaaagatggta gacaaaggcaatctgatcgaccgcctaaggatcacaaacgtgaaaagcaacacattaatcgttcgactccgaaaccagaa gcaaaatcatgtaaattttgtgggtataaacatgtcatgcgaaaggaagattgcccagcatggggtaatgtctgtgatcg ttgccacggtttaaaccactttaagaaaaagtgtaaaaagaaaaaagtgcatgtagtaagtaaagatacatgggaagata gtgaagcatcttactccgagtccgattcatcacaggataacggcaaatggcttaaagctgtacatactcgaaataaggat ctcgtttccgctaaaatgtgtgtaaatgattgcgaagtatcatttcaaattgatagtgctgctgagataaacacaatttg tcaacgctatgtccgcaaagatcaagttcaacctacatcaatgaccttgactatgtttaatgaaaaaaatgcaaaatggg ttcttggcaaaatcgtaaagcaaatcgacaagtatacatatattgtgaaatcacaggaaggtgttacgtacagacgaaat cgtctacacattcgaccaaccgctgttgaagcagtcataagagataaatctccgatacgtgttgtcgaaccgaatattca agtatcgtatccagtgattcaggatcctagtcagaatccgattccgaaaattgtgaatgatacaagtcaaccgttgaaac ccagtgaaattgtacccgtaattacacctacatccgctccaactcaggaaaccgcaccgtcattgcgcagatctgaccgt atccgccgacgtcctgccaagtttgatgactatactacttaa |
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Protein
| Protein ID | pfu_aug1.0_8765.1_24474.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8765.1_24474.t1 MDETINFRADSLQILVLDEADRILDMGFAKEMNAIIENLPNTRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENSEYST PVQLEQNYIVCELHDKMNMLWSFIKNHLKSKVLAFFTSCKQRYIHFTDKCMHYRERGRAKSCNFGDSEERMIRDKIVFST SGKVQQLLLREDNLNLQRAIKICQSYEQANKQAQAMREDQGQVHKITKHQKDGRQRQSDRPPKDHKREKQHINRSTPKPE AKSCKFCGYKHVMRKEDCPAWGNVCDRCHGLNHFKKKCKKKKVHVVSKDTWEDSEASYSESDSSQDNGKWLKAVHTRNKD LVSAKMCVNDCEVSFQIDSAAEINTICQRYVRKDQVQPTSMTLTMFNEKNAKWVLGKIVKQIDKYTYIVKSQEGVTYRRN RLHIRPTAVEAVIRDKSPIRVVEPNIQVSYPVIQDPSQNPIPKIVNDTSQPLKPSEIVPVITPTSAPTQETAPSLRRSDR IRRRPAKFDDYTT |
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