Gene
| Gene Model ID | pfu_aug1.0_8766.1_09827 |
|---|---|
| Locus | scaffold8766.1 : 1 ... 15055 : - |
| To GenomeBrowser | scaffold8766.1:1..15055 |
| Genes list of scaffold | scaffold8766.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8766.1_09827.t1 | 3 | 1 | Ank_2 | 27 | 89 | 3.4e-08 | 33.7 | 0.00021 | 0.26 | 11.6 |
| pfu_aug1.0_8766.1_09827.t1 | 3 | 1 | Ank_4 | 27 | 64 | 8.2e-06 | 26.1 | 0.099 | 120.0 | 3.3 |
| pfu_aug1.0_8766.1_09827.t1 | 2 | 1 | Ank_5 | 74 | 98 | 9.6e-07 | 28.8 | 0.00083 | 1.0 | 9.6 |
| pfu_aug1.0_8766.1_09827.t1 | 3 | 2 | Ank_4 | 75 | 98 | 8.2e-06 | 26.1 | 0.09 | 110.0 | 3.4 |
| pfu_aug1.0_8766.1_09827.t1 | 3 | 1 | TPR_11 | 125 | 195 | 1.1e-20 | 72.9 | 2.6e-10 | 3.2e-07 | 29.9 |
| pfu_aug1.0_8766.1_09827.t1 | 4 | 1 | TPR_2 | 130 | 157 | 9.0e-09 | 34.6 | 0.028 | 35.0 | 4.6 |
| pfu_aug1.0_8766.1_09827.t1 | 4 | 1 | TPR_1 | 131 | 157 | 1.3e-06 | 27.7 | 0.21 | 260.0 | 1.4 |
| pfu_aug1.0_8766.1_09827.t1 | 3 | 1 | TPR_12 | 133 | 186 | 6.2e-07 | 29.2 | 0.0058 | 7.2 | 6.6 |
| pfu_aug1.0_8766.1_09827.t1 | 3 | 2 | TPR_11 | 183 | 219 | 1.1e-20 | 72.9 | 0.0066 | 8.1 | 6.1 |
| pfu_aug1.0_8766.1_09827.t1 | 4 | 2 | TPR_2 | 200 | 222 | 9.0e-09 | 34.6 | 0.028 | 35.0 | 4.6 |
| pfu_aug1.0_8766.1_09827.t1 | 4 | 2 | TPR_1 | 204 | 221 | 1.3e-06 | 27.7 | 0.38 | 470.0 | 0.6 |
| pfu_aug1.0_8766.1_09827.t1 | 3 | 2 | Ank_2 | 300 | 350 | 3.4e-08 | 33.7 | 0.042 | 52.0 | 4.2 |
| pfu_aug1.0_8766.1_09827.t1 | 3 | 3 | TPR_11 | 388 | 458 | 1.1e-20 | 72.9 | 1.9e-13 | 2.3e-10 | 39.9 |
| pfu_aug1.0_8766.1_09827.t1 | 4 | 3 | TPR_2 | 392 | 414 | 9.0e-09 | 34.6 | 0.00036 | 0.44 | 10.5 |
| pfu_aug1.0_8766.1_09827.t1 | 4 | 3 | TPR_1 | 392 | 414 | 1.3e-06 | 27.7 | 5.6e-06 | 0.0069 | 15.9 |
| pfu_aug1.0_8766.1_09827.t1 | 3 | 2 | TPR_12 | 397 | 452 | 6.2e-07 | 29.2 | 1.1e-06 | 0.0013 | 18.6 |
| pfu_aug1.0_8766.1_09827.t1 | 4 | 4 | TPR_1 | 431 | 453 | 1.3e-06 | 27.7 | 0.0046 | 5.7 | 6.7 |
| pfu_aug1.0_8766.1_09827.t1 | 4 | 4 | TPR_2 | 433 | 461 | 9.0e-09 | 34.6 | 0.00061 | 0.76 | 9.8 |
| pfu_aug1.0_8766.1_09827.t1 | 3 | 3 | Ank_4 | 480 | 530 | 8.2e-06 | 26.1 | 5.3e-05 | 0.066 | 13.7 |
| pfu_aug1.0_8766.1_09827.t1 | 3 | 3 | Ank_2 | 483 | 520 | 3.4e-08 | 33.7 | 7.3e-05 | 0.09 | 13.1 |
| pfu_aug1.0_8766.1_09827.t1 | 2 | 2 | Ank_5 | 498 | 550 | 9.6e-07 | 28.8 | 6.8e-05 | 0.084 | 13.1 |
| pfu_aug1.0_8766.1_09827.t1 | 3 | 3 | TPR_12 | 648 | 678 | 6.2e-07 | 29.2 | 0.45 | 560.0 | 0.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_8766.1_09827.t1 | gi|325191850|emb|CCA26322.1| | conserved hypothetical protein [Albugo laibachii Nc14] | 1.0e-10 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_8766.1_09827.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8766.1_09827.t1 atgtgtactaaagaaaatgtagtagaggagaaagtcactttcctcgcggagattgtgtctactgtcatccaagtatcagg taccacagatttactcaaatacatgcttaagcagtacctaaacactgatgctaggaaaaatgctgtagataagaacagag actctgcctttcactttcttgtacgatcgggaaaagccaatagtacactaggagagacactgttcagactgcttctgaac aatggatgtaacccaaatctggtggatgccgcctcaaaacgaccaatagattatgtcagacctgtagatcaggcatacgc aatactcaattctgctcagaaagttgaagatgagaatgtgagggaaaagttacagaaactgaaagacgagggtaataagg ctcatagagagggtaacaactacaaggctaacgaagcttacactaaggggctacaactcatacagaataatggactacca cccaaggaggctgcagtgttcctcagtaatcgttcagctgtacacagtgcatgtggtaaaacaatgaaagctctcgatga tgctgaactctcagtactcaaagatcctacttggcacaagggtcactggagacgagctcagcttttgcggcagttagaga agccacgggaagctttcttggcattcatggagggctacgataagagtaccgcctgctccctaacagatagactcaacttc ttggtggaggctgccgtctcatttacttccattaaaggtatagatgaaaaagaggatgtatttgatcagtttgagaacat accaagagatgacacatggcagacagtgttgttcaggttaagtgatttaaccataatcaagacattcgagcaggatttcc tcaaagccctaaagttccaggacattaatggtaacagtccataccatgctttgtacatgatgagccagagacctagcatg gaaaacctacttctggtcaccaagtttcttctttctgttggcttctccatcagcaccaaaaataatgtaggccacatgcc gcttcattacctcaaacctgaagacggtcagctctttaagatcgtcaaagcttcaactaaagctaccaacggtggatcct ccataaacaagaccccagccaatgtcagcatgcaggatgtactgaacctgaagacaaaaggtaatgaagcttttcacatg gggaggtttccggaggcgatccagcattactcggacgctatatgtgttctggagaatgtgaagacagatgaatctaatag ccgtcaatttgctgttctctacggtaacagagcagagtgtcacatgaaactaggtcataatgcagcagccaggaaagatg ccgtagagagtgtgtcacacgatggacattgattgtcattcatgccttatctgactctgtcactttatacatgttccatg agcctactggagtacatcattaataatgtagtgaagcctaaacaagagcagaacattgtagatgagaaaggaaatactgc gttacacgcggccacaagggagggacgtacacagcttctgacgcgggtacatgttgttatcttcctaatagaggagactg atatcgataccatgaagaaaaacaaagacgggaagttagctatagagtacctgccaaaaggggaggttaaacttggagag ttccttataaacaggatgaccactcaggatgatttgacaaagcaaatgaaaaaacaacgaatgaaacaggaagaggagaa gagacgtcaagaaacagaaagaaaaaaacaggagatggaaagaaaaagaagagaggacatggagagaaggaatcaagaaa aacagaaagtggaaccagacaaaaagacaaagaaagaagcacagaaagaaaatcaaaaaccacagaacagaggtccaccc caggatcagtgtgtacactgtttagagcttctagaacaggctaaagatcttatagaggaaagtaaaaagaaggcgtataa tgagtttgccaagatactacagaagaagcacaactctccacaacataagaaaatagaggaagatgtattacagattatcg tcagaagtatgggcagagtgctcaatccag |
|
Protein
| Protein ID | pfu_aug1.0_8766.1_09827.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8766.1_09827.t1 MCTKENVVEEKVTFLAEIVSTVIQVSGTTDLLKYMLKQYLNTDARKNAVDKNRDSAFHFLVRSGKANSTLGETLFRLLLN NGCNPNLVDAASKRPIDYVRPVDQAYAILNSAQKVEDENVREKLQKLKDEGNKAHREGNNYKANEAYTKGLQLIQNNGLP PKEAAVFLSNRSAVHSACGKTMKALDDAELSVLKDPTWHKGHWRRAQLLRQLEKPREAFLAFMEGYDKSTACSLTDRLNF LVEAAVSFTSIKGIDEKEDVFDQFENIPRDDTWQTVLFRLSDLTIIKTFEQDFLKALKFQDINGNSPYHALYMMSQRPSM ENLLLVTKFLLSVGFSISTKNNVGHMPLHYLKPEDGQLFKIVKASTKATNGGSSINKTPANVSMQDVLNLKTKGNEAFHM GRFPEAIQHYSDAICVLENVKTDESNSRQFAVLYGNRAECHMKLGHNAAARKDAVESVSHDGHXLSFMPYLTLSLYTCSM SLLEYIINNVVKPKQEQNIVDEKGNTALHAATREGRTQLLTRVHVVIFLIEETDIDTMKKNKDGKLAIEYLPKGEVKLGE FLINRMTTQDDLTKQMKKQRMKQEEEKRRQETERKKQEMERKRREDMERRNQEKQKVEPDKKTKKEAQKENQKPQNRGPP QDQCVHCLELLEQAKDLIEESKKKAYNEFAKILQKKHNSPQHKKIEEDVLQIIVRSMGRVLNP |
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