Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_8797.1_02646
Locus scaffold8797.1 : 6046 ... 18430 : +
To GenomeBrowser scaffold8797.1:6046..18430
Genes list of scaffold scaffold8797.1
Synonym pfu_aug2.0_56.1_20142

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_8797.1_02646.t1 1 1 C2 76 159 5.2e-16 58.2 1.9e-19 7.1e-16 57.8

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_8797.1_02646.t1 gi|242021084|ref|XP_002430976.1| synaptotagmin-6, putative [Pediculus humanus corporis] 3.0e-26

Transcript
Transcript IDpfu_aug1.0_8797.1_02646.t1
Definition-
>pfu_aug1.0_8797.1_02646.t1
atggtgtctgtggtcgttttgggcgtggtccttggagttacgggtgttgttgtcagtgttgtcctgttggttatctgcaa
aatgtaccggaagcggaaacaccgccattgcattccttcgtacagcggatatgacgcagttggcgactacaagcctccat
ctataatgtctgtttctacaacgtcacaggtagccattcgattgatgaaaggacatttatctccagctcaggacttgtcg
tcagagtcaactcgagacgcagaagggggatttggagacccgtatgtcaggatctgtctaataccggaagttgacgaacg
cataagacaatcctctgtaaaacggaagacttgtaatccgttttataatgaatatttcaaattcccagtgacatttgatg
atgtaaaagacagaattctacttttccaaatctatgattacgacaaattttctcgccataaatcagtcggtgaagtgagc
gtcgacttaggaaaagttgatgtcagcaacagtgtagaattatggtcggatatacaaaaagcgacacag

Protein
Protein IDpfu_aug1.0_8797.1_02646.t1
Definition-
>pfu_aug1.0_8797.1_02646.t1
MVSVVVLGVVLGVTGVVVSVVLLVICKMYRKRKHRHCIPSYSGYDAVGDYKPPSIMSVSTTSQVAIRLMKGHLSPAQDLS
SESTRDAEGGFGDPYVRICLIPEVDERIRQSSVKRKTCNPFYNEYFKFPVTFDDVKDRILLFQIYDYDKFSRHKSVGEVS
VDLGKVDVSNSVELWSDIQKATQ

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495