Gene
| Gene Model ID | pfu_aug1.0_8801.1_09837 |
|---|---|
| Locus | scaffold8801.1 : 12219 ... 32071 : - |
| To GenomeBrowser | scaffold8801.1:12219..32071 |
| Genes list of scaffold | scaffold8801.1 |
| Synonym | pfu_aug2.0_719.1_31096 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8801.1_09837.t1 | 1 | 1 | PDZ | 14 | 63 | 4.1e-06 | 26.8 | 2.6e-09 | 9.5e-06 | 25.7 |
| pfu_aug1.0_8801.1_09837.t1 | 3 | 1 | Calsarcin | 418 | 458 | 5.8e-06 | 25.7 | 0.00077 | 2.9 | 7.0 |
| pfu_aug1.0_8801.1_09837.t1 | 3 | 2 | Calsarcin | 544 | 635 | 5.8e-06 | 25.7 | 8.4e-07 | 0.0031 | 16.7 |
| pfu_aug1.0_8801.1_09837.t1 | 3 | 3 | Calsarcin | 590 | 699 | 5.8e-06 | 25.7 | 9.9e-05 | 0.37 | 9.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_8801.1_09837.t1 | gi|241621631|ref|XP_002408828.1| | hypothetical protein IscW_ISCW020576 [Ixodes scapularis] | 1.0e-27 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 2 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_8801.1_09837.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8801.1_09837.t1 aatcgaaagctagtgtcttagcgtttgatcatatagatgccaaggttcgtaaaaagagcaaagcacaacatggaggcctt caggagggggatattctattgtccattaatggtacgaccatgcaggggaagtctcacgaggacgccatgtatcttgtcga caatgctcaagacgggctcagaattcaggttcaaagacctggaggtagaaagatggcacctgctcaagcccagcaacctg cacatgtggcgccatcttcacaagggaacattgtgtcgtctgcttccacaacttattctgtgaaggagggtgataagcga agaagtgtttctcaacacgaattcgaggaagccatgcagggcgggataaaatcaaagacttttgttaagcacgaggagat cgtaaacaaaccatctccccgaatttcctctcaatcaagcatgcatgctatgagaagcgaggggcgatcagaaccaatgc agatctatgtacaggttgatgatcaaatgggtcataaagaaaacatttcaccaattccaaacaattttcagccacattca gcatcgagcccagttcccatgttttcagtcaaaaacataaaaagtcaactgcaatcacctgctcagccgccatcaatgac gtcacatcagtctgttgaacaacaacatggtcctactccatttcaagagcaatcaagtaatatcccaatgttcagagtct ccaaatttgaggcgcacaaattccaagagcgaccccagagagatgaaagcgattttcccaaattcgatccatcggcgaat gttccactttctaatataccgccggctccaccagcgccaccactgccaccgtctataccaagagaagtgaatcccgacga accgatgttatttccggttcccaaatatacgtcgcaaatgttacgacaggatgcgcttgaaaggtcaagatatgaccttg acagcgatgaggaggaggaggagcatccggaccatctaccgatctttgctcctcctgttcagtttactgcagaggagcgt gctcttatggacagcggatatgacgaaaatctgttaacaccaagaagtgtagagaggccgaccgacctcccggatttaga cattcagagcggcgcggagagtgaccatgtacctggtactccagaaactgggtcaacgggtgttcgaaaaaagaagaaac ttttctcggactcggccttctacgatgatcccgatgcgcattacccgaccatcgaggagcaaatggatctgtgtaagaag attgccaaatcgctgacgtctgcagccaataagaaagcacgaggcgctcggatgtttgccaagcgcaagcgaaagtcagg gaggtggatacatgacggtgagttctgtcacggatcgtcatccgcgggcgatgtggcggacctacgcgaccttgagagcg aattaaatcccgaggagggaggaactaaacctcttttctcattccggataccaaatctagcaaaacggattaattacgaa tttgaagaaaaaatgagtctgtctccagatgaatttgagaggcttcgcctaggcaaggataaagtcgatcaccgatcggt atctcctaatacttgccataatttagtgatggatttgcagtctcccagaaacaggggcgcaaaactttttcaaaaacgtg ccgctcgttctgaaaaatgggtgatcgacgaaacaaatgcggccaaaccgccaccgcccaggcttcaaaacatggtctca agtccggcgaagtcaatgctctctccttgggaagcggcctcggaaaatcccattggaagcgtagaaaaggcttttgaaca tcttgacggtgcggataaactccgagaagtcaaccaaactttcaaacaacaacaacaacaatggcggctaccgcaacccc ctatgcatcaccctatgcatcctcctatgaccacgccttatcaacagaccgtcactacgacacagaaaattcactcactt aaaacgtccgagaagcctaatgtcattggagggcctaattataacagattggctaaaggatggcaaacatcgtcaaacac tggctcgtattctagttcacagtatcctcatggacaacagcattttcagacttttagacaggaaccgccgccccctcccc cgcccatcaaacccctgaagcaacaggacaattacgatcggtcggtctcctcctacagtcaaggccctcacggtcacact aggagcacaacctctacgtctcaccacacgacgccttatggcggcggctacggtcaacctcaaggttacacaactacgga ctcgtataattatcaaatgacggcggtttccgatttctaa |
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Protein
| Protein ID | pfu_aug1.0_8801.1_09837.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8801.1_09837.t1 SKASVLAFDHIDAKVRKKSKAQHGGLQEGDILLSINGTTMQGKSHEDAMYLVDNAQDGLRIQVQRPGGRKMAPAQAQQPA HVAPSSQGNIVSSASTTYSVKEGDKRRSVSQHEFEEAMQGGIKSKTFVKHEEIVNKPSPRISSQSSMHAMRSEGRSEPMQ IYVQVDDQMGHKENISPIPNNFQPHSASSPVPMFSVKNIKSQLQSPAQPPSMTSHQSVEQQHGPTPFQEQSSNIPMFRVS KFEAHKFQERPQRDESDFPKFDPSANVPLSNIPPAPPAPPLPPSIPREVNPDEPMLFPVPKYTSQMLRQDALERSRYDLD SDEEEEEHPDHLPIFAPPVQFTAEERALMDSGYDENLLTPRSVERPTDLPDLDIQSGAESDHVPGTPETGSTGVRKKKKL FSDSAFYDDPDAHYPTIEEQMDLCKKIAKSLTSAANKKARGARMFAKRKRKSGRWIHDGEFCHGSSSAGDVADLRDLESE LNPEEGGTKPLFSFRIPNLAKRINYEFEEKMSLSPDEFERLRLGKDKVDHRSVSPNTCHNLVMDLQSPRNRGAKLFQKRA ARSEKWVIDETNAAKPPPPRLQNMVSSPAKSMLSPWEAASENPIGSVEKAFEHLDGADKLREVNQTFKQQQQQWRLPQPP MHHPMHPPMTTPYQQTVTTTQKIHSLKTSEKPNVIGGPNYNRLAKGWQTSSNTGSYSSSQYPHGQQHFQTFRQEPPPPPP PIKPLKQQDNYDRSVSSYSQGPHGHTRSTTSTSHHTTPYGGGYGQPQGYTTTDSYNYQMTAVSDF |
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