Gene
| Gene Model ID | pfu_aug1.0_8806.1_09839 |
|---|---|
| Locus | scaffold8806.1 : 26826 ... 36396 : + |
| To GenomeBrowser | scaffold8806.1:26826..36396 |
| Genes list of scaffold | scaffold8806.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8806.1_09839.t1 | 2 | 1 | DNA_pol3_delta2 | 25 | 131 | 8.8e-09 | 35.2 | 3.6e-12 | 8.8e-09 | 35.2 |
| pfu_aug1.0_8806.1_09839.t1 | 1 | 1 | DNA_pol3_delta | 77 | 171 | 8.5e-06 | 25.3 | 6.0e-09 | 1.5e-05 | 24.6 |
| pfu_aug1.0_8806.1_09839.t1 | 2 | 1 | Rep_fac_C | 135 | 152 | 9.9e-10 | 38.2 | 0.32 | 800.0 | 0.1 |
| pfu_aug1.0_8806.1_09839.t1 | 2 | 2 | DNA_pol3_delta2 | 210 | 210 | 8.8e-09 | 35.2 | 0.56 | 1400.0 | -1.2 |
| pfu_aug1.0_8806.1_09839.t1 | 2 | 2 | Rep_fac_C | 244 | 290 | 9.9e-10 | 38.2 | 5.1e-12 | 1.3e-08 | 34.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_8806.1_09839.t1 | gi|72016481|ref|XP_779912.1| | PREDICTED: replication factor C subunit 3 [Strongylocentrotus purpuratus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_8806.1_09839.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8806.1_09839.t1 atgtgcttaatacgggagctttacggctcaggggtggaaaaactccgaatagaacagcacaacttcactacaccatcaaa taagaagctggaaatttccactatatccagtaactaccacattgaggtcaatccaagcgatgtgggaatacaagaccgag tcgtcattcaagaactcatcaagacagtagcgcaggtgaatcagctagactcctctcaaagagatttcaaagttgtaata ctaactgaagtggacaagttaactaaggatgcccagcatgcactgcgtcgtaccatggagaaatacatggctacatgtcg cttaatcctatgctgtaactctaccagtaaagtgataccagccatacgtagtagatgtctgggaatcagagtggctgctc ctacagtggaagagatcacccaagtattgcagaatatatgcaagaaggaaggattgactctacctgtagaattagctcga cggattgccgataaaagtcagcgaaatatacgacgagctatattaatgtgtgaggcgtgtcgtgtacaacagtacccctt cagtgcagaccaggaggttagtttaccagactgggaattgttcctgagggagacggccaatcaaataatacagcagcaaa gtccaagacgtaataaagcaacaacacataaaacagtatgcaatgatgcaacattgaatgacgcaacgcgtaatgaagca acccaatgcaagggcttactccaggagctcatatcaaactgcgatggagaattgaagacagaggtcgtccagtctgcggc attctttgaacatcgtcttcagctcggacaaaaggccatcttccatattgaagctttcattgcaaaatttatggctattt acaaacggtttatggaagacaatatcgctgatttgttctga |
|
Protein
| Protein ID | pfu_aug1.0_8806.1_09839.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8806.1_09839.t1 MCLIRELYGSGVEKLRIEQHNFTTPSNKKLEISTISSNYHIEVNPSDVGIQDRVVIQELIKTVAQVNQLDSSQRDFKVVI LTEVDKLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIPAIRSRCLGIRVAAPTVEEITQVLQNICKKEGLTLPVELAR RIADKSQRNIRRAILMCEACRVQQYPFSADQEVSLPDWELFLRETANQIIQQQSPRRNKATTHKTVCNDATLNDATRNEA TQCKGLLQELISNCDGELKTEVVQSAAFFEHRLQLGQKAIFHIEAFIAKFMAIYKRFMEDNIADLF |
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