Gene
| Gene Model ID | pfu_aug1.0_88144.1_20691 |
|---|---|
| Locus | scaffold88144.1 : 1 ... 1582 : + |
| To GenomeBrowser | scaffold88144.1:1..1582 |
| Genes list of scaffold | scaffold88144.1 |
| Synonym | pfu_aug2.0_82.1_06898 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_88144.1_20691.t1 | 1 | 1 | SPARC_Ca_bdg | 7 | 77 | 1.0e-05 | 25.5 | 1.7e-08 | 2.8e-05 | 24.0 |
| pfu_aug1.0_88144.1_20691.t1 | 2 | 1 | EF-hand_1 | 11 | 36 | 9.7e-17 | 58.9 | 1.6e-11 | 2.6e-08 | 32.6 |
| pfu_aug1.0_88144.1_20691.t1 | 1 | 1 | EF-hand_7 | 11 | 78 | 6.4e-16 | 58.2 | 5.4e-19 | 8.9e-16 | 57.7 |
| pfu_aug1.0_88144.1_20691.t1 | 2 | 1 | EF-hand_5 | 13 | 32 | 4.2e-14 | 51.1 | 2.1e-09 | 3.5e-06 | 26.0 |
| pfu_aug1.0_88144.1_20691.t1 | 2 | 1 | EF-hand_6 | 13 | 35 | 1.8e-12 | 46.0 | 1.2e-08 | 2.0e-05 | 24.0 |
| pfu_aug1.0_88144.1_20691.t1 | 2 | 1 | EF-hand_8 | 13 | 29 | 5.8e-11 | 41.8 | 0.0017 | 2.8 | 7.6 |
| pfu_aug1.0_88144.1_20691.t1 | 2 | 2 | EF-hand_8 | 22 | 79 | 5.8e-11 | 41.8 | 6.5e-14 | 1.1e-10 | 40.9 |
| pfu_aug1.0_88144.1_20691.t1 | 2 | 2 | EF-hand_1 | 57 | 81 | 9.7e-17 | 58.9 | 2.6e-09 | 4.2e-06 | 25.6 |
| pfu_aug1.0_88144.1_20691.t1 | 2 | 2 | EF-hand_5 | 58 | 77 | 4.2e-14 | 51.1 | 1.9e-08 | 3.1e-05 | 23.0 |
| pfu_aug1.0_88144.1_20691.t1 | 2 | 2 | EF-hand_6 | 58 | 81 | 1.8e-12 | 46.0 | 1.9e-07 | 0.00031 | 20.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_88144.1_20691.t1 | gi|3283882|gb|AAC25387.1| | BDP-1 protein [Homo sapiens] | 2.0e-19 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_88144.1_20691.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_88144.1_20691.t1 tttctagtagtccaaacaacgagacgaaatgggcatgggctttcagtatgtatgatattgacggtgatggatttatttca cgggaagagatgtcacacattatgaaggcaattttctcgatggcagaattcaagcttccaaaaggatataaaaccacaga cgaatatacagacgatattttcaaatcaatcgatactaatcaggatggattaattagccaagaggagtttattaacggag ccaagacaaatcccgtcatcatcgatctcttacagccaaatcctgaagctgatgatgacaacgaggactgttatgagtag |
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Protein
| Protein ID | pfu_aug1.0_88144.1_20691.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_88144.1_20691.t1 SSSPNNETKWAWAFSMYDIDGDGFISREEMSHIMKAIFSMAEFKLPKGYKTTDEYTDDIFKSIDTNQDGLISQEEFINGA KTNPVIIDLLQPNPEADDDNEDCYE |
|