Gene
| Gene Model ID | pfu_aug1.0_8819.1_45938 |
|---|---|
| Locus | scaffold8819.1 : 9846 ... 19613 : + |
| To GenomeBrowser | scaffold8819.1:9846..19613 |
| Genes list of scaffold | scaffold8819.1 |
| Synonym | pfu_aug2.0_75.1_16853 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8819.1_45938.t1 | 2 | 1 | MCLC | 104 | 284 | 1.2e-31 | 109.7 | 3.9e-35 | 1.2e-31 | 109.7 |
| pfu_aug1.0_8819.1_45938.t1 | 2 | 2 | MCLC | 366 | 439 | 1.2e-31 | 109.7 | 0.13 | 400.0 | -1.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_8819.1_45938.t1 | gi|260831412|ref|XP_002610653.1| | hypothetical protein BRAFLDRAFT_65844 [Branchiostoma floridae] | 4.0e-32 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_8819.1_45938.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8819.1_45938.t1 atgaagtggtttttaatacatgtagcagtcttcctgattttatttccccatataagcacactacctgatgatgatggtga tgactatatagacccgtttgatatgaccagtgatatgaaaccaaaaccaaagaatccttctctgtatcccacagggcatt cacaagagtatagcatgttgattaagctgtccaaagacgatatctacgttctgagtagatttgtgcgggaaaataaaggg agtttacatgatgtgcacgagattctctcttctatgacgttaagtgtgacagaatcacatttgggaacttttggcaaagt ttccttatggtttgaagatagatttggcactagtatcgatgcagctctaaagatgctgatcatcatgctgtgtgcttcta tattcactgtattagagatgagactacagatttcctggcgtcagcgctttgtaaagctcattgtactggccttcatcgtt agcattcctatgacttggtatgaattgtacaaggctgcagagattgaacagcagacagtagcaatgaaggacgtaccacc agattgtgtgaaggacaatgcagaggagaactggtttgacactacgctgctggcgttcaaatctttagtaacttttgaga aagacaaatgccagaaatattatgaacatgtgctgatagatcctttcttgaaggttccacccaccaaagctgtagctgtt acttttgtccgtttctttgtttcaccactgaaagatgtcggtacatcactcagcgagtttatccgggcccttcttattga tctgcccctgactttgtatccagtagccctggctcttgttaccgttttctttttcttacttctattcatgtggtttggat acagtatcagactgccatttttcctgtctattgaaccaaccccaggttatggggcactcgggggaggggatgcaactcaa gtcaacaaagctattgaggaaaatactcaaaaaatgattgaacagattcaagctattcaagaggatatgcatgaaagaaa catcagcatgcaagaaaagattagcaatatggaaaaacttcaaagatttgcactggagcatactcatgccaccccaacag atgatgttagggctccaacacttcagtatgcaatcttgcccacagcaaagtcaaagtcatctcctgaaatagtcaggaaa cgcagggaggaaaatgtcttggaaaatagctttgaaagttccagtagtgtagagagagcggaagttaaagctccaatccc atgttcagactactcagaaacagatggggaagaaactaaagtgttaactgtaccatctaactctgcacatggcttgtcac gacaatcacctgatcgtaagagcaagctcccgttgagccttcagaggagctcaagtaaagaaaagggcagctctacctca ggcacatctagtaatcatattgtacaggatagtggagacaatantgaatgttcacagatctatatctcaacctga |
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Protein
| Protein ID | pfu_aug1.0_8819.1_45938.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8819.1_45938.t1 MKWFLIHVAVFLILFPHISTLPDDDGDDYIDPFDMTSDMKPKPKNPSLYPTGHSQEYSMLIKLSKDDIYVLSRFVRENKG SLHDVHEILSSMTLSVTESHLGTFGKVSLWFEDRFGTSIDAALKMLIIMLCASIFTVLEMRLQISWRQRFVKLIVLAFIV SIPMTWYELYKAAEIEQQTVAMKDVPPDCVKDNAEENWFDTTLLAFKSLVTFEKDKCQKYYEHVLIDPFLKVPPTKAVAV TFVRFFVSPLKDVGTSLSEFIRALLIDLPLTLYPVALALVTVFFFLLLFMWFGYSIRLPFFLSIEPTPGYGALGGGDATQ VNKAIEENTQKMIEQIQAIQEDMHERNISMQEKISNMEKLQRFALEHTHATPTDDVRAPTLQYAILPTAKSKSSPEIVRK RREENVLENSFESSSSVERAEVKAPIPCSDYSETDGEETKVLTVPSNSAHGLSRQSPDRKSKLPLSLQRSSSKEKGSSTS GTSSNHIVQDSGDNXECSQIYIST |
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