Gene
| Gene Model ID | pfu_aug1.0_88198.1_56745 |
|---|---|
| Locus | scaffold88198.1 : 166 ... 1997 : + |
| To GenomeBrowser | scaffold88198.1:166..1997 |
| Genes list of scaffold | scaffold88198.1 |
| Synonym | pfu_aug2.0_3490.1_02417 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_88198.1_56745.t1 | 8 | 1 | LRR_8 | 72 | 132 | 4.0e-37 | 125.7 | 1.2e-08 | 2.5e-05 | 23.9 |
| pfu_aug1.0_88198.1_56745.t1 | 4 | 1 | LRR_5 | 96 | 208 | 2.0e-14 | 53.3 | 2.9e-05 | 0.062 | 13.0 |
| pfu_aug1.0_88198.1_56745.t1 | 11 | 1 | LRR_4 | 121 | 154 | 2.2e-21 | 74.9 | 4.7e-05 | 0.1 | 12.2 |
| pfu_aug1.0_88198.1_56745.t1 | 9 | 1 | LRR_6 | 121 | 132 | 8.3e-06 | 25.3 | 0.041 | 87.0 | 3.6 |
| pfu_aug1.0_88198.1_56745.t1 | 10 | 1 | LRR_1 | 122 | 146 | 4.1e-11 | 41.3 | 0.012 | 26.0 | 5.3 |
| pfu_aug1.0_88198.1_56745.t1 | 4 | 2 | LRR_5 | 171 | 234 | 2.0e-14 | 53.3 | 0.0031 | 6.5 | 6.4 |
| pfu_aug1.0_88198.1_56745.t1 | 8 | 2 | LRR_8 | 178 | 235 | 4.0e-37 | 125.7 | 1.3e-13 | 2.8e-10 | 39.8 |
| pfu_aug1.0_88198.1_56745.t1 | 10 | 2 | LRR_1 | 179 | 200 | 4.1e-11 | 41.3 | 0.0025 | 5.2 | 7.4 |
| pfu_aug1.0_88198.1_56745.t1 | 11 | 2 | LRR_4 | 180 | 217 | 2.2e-21 | 74.9 | 1.4e-11 | 3.0e-08 | 33.0 |
| pfu_aug1.0_88198.1_56745.t1 | 9 | 2 | LRR_6 | 200 | 215 | 8.3e-06 | 25.3 | 0.00031 | 0.67 | 10.2 |
| pfu_aug1.0_88198.1_56745.t1 | 10 | 3 | LRR_1 | 202 | 220 | 4.1e-11 | 41.3 | 0.0021 | 4.4 | 7.7 |
| pfu_aug1.0_88198.1_56745.t1 | 11 | 3 | LRR_4 | 226 | 240 | 2.2e-21 | 74.9 | 0.034 | 72.0 | 3.1 |
| pfu_aug1.0_88198.1_56745.t1 | 11 | 4 | LRR_4 | 226 | 262 | 2.2e-21 | 74.9 | 0.0019 | 4.0 | 7.1 |
| pfu_aug1.0_88198.1_56745.t1 | 9 | 3 | LRR_6 | 226 | 236 | 8.3e-06 | 25.3 | 0.19 | 400.0 | 1.6 |
| pfu_aug1.0_88198.1_56745.t1 | 11 | 5 | LRR_4 | 246 | 289 | 2.2e-21 | 74.9 | 1.6e-05 | 0.033 | 13.8 |
| pfu_aug1.0_88198.1_56745.t1 | 9 | 4 | LRR_6 | 246 | 260 | 8.3e-06 | 25.3 | 0.039 | 83.0 | 3.7 |
| pfu_aug1.0_88198.1_56745.t1 | 8 | 3 | LRR_8 | 247 | 310 | 4.0e-37 | 125.7 | 7.7e-10 | 1.6e-06 | 27.7 |
| pfu_aug1.0_88198.1_56745.t1 | 10 | 4 | LRR_1 | 247 | 265 | 4.1e-11 | 41.3 | 0.0047 | 9.9 | 6.6 |
| pfu_aug1.0_88198.1_56745.t1 | 9 | 5 | LRR_6 | 273 | 287 | 8.3e-06 | 25.3 | 0.038 | 80.0 | 3.7 |
| pfu_aug1.0_88198.1_56745.t1 | 8 | 4 | LRR_8 | 274 | 330 | 4.0e-37 | 125.7 | 7.7e-12 | 1.6e-08 | 34.1 |
| pfu_aug1.0_88198.1_56745.t1 | 11 | 6 | LRR_4 | 274 | 313 | 2.2e-21 | 74.9 | 9.1e-07 | 0.0019 | 17.7 |
| pfu_aug1.0_88198.1_56745.t1 | 4 | 3 | LRR_5 | 276 | 362 | 2.0e-14 | 53.3 | 1.1e-07 | 0.00023 | 20.8 |
| pfu_aug1.0_88198.1_56745.t1 | 10 | 5 | LRR_1 | 276 | 295 | 4.1e-11 | 41.3 | 0.0069 | 15.0 | 6.1 |
| pfu_aug1.0_88198.1_56745.t1 | 9 | 6 | LRR_6 | 298 | 310 | 8.3e-06 | 25.3 | 0.00076 | 1.6 | 9.0 |
| pfu_aug1.0_88198.1_56745.t1 | 11 | 7 | LRR_4 | 299 | 329 | 2.2e-21 | 74.9 | 0.0041 | 8.8 | 6.0 |
| pfu_aug1.0_88198.1_56745.t1 | 10 | 6 | LRR_1 | 299 | 321 | 4.1e-11 | 41.3 | 0.00031 | 0.65 | 10.2 |
| pfu_aug1.0_88198.1_56745.t1 | 8 | 5 | LRR_8 | 308 | 357 | 4.0e-37 | 125.7 | 4.0e-05 | 0.084 | 12.6 |
| pfu_aug1.0_88198.1_56745.t1 | 8 | 6 | LRR_8 | 323 | 386 | 4.0e-37 | 125.7 | 1.1e-05 | 0.023 | 14.4 |
| pfu_aug1.0_88198.1_56745.t1 | 8 | 7 | LRR_8 | 364 | 411 | 4.0e-37 | 125.7 | 1.5e-06 | 0.0033 | 17.1 |
| pfu_aug1.0_88198.1_56745.t1 | 11 | 8 | LRR_4 | 371 | 389 | 2.2e-21 | 74.9 | 5.3e-05 | 0.11 | 12.1 |
| pfu_aug1.0_88198.1_56745.t1 | 9 | 7 | LRR_6 | 375 | 386 | 8.3e-06 | 25.3 | 0.0067 | 14.0 | 6.1 |
| pfu_aug1.0_88198.1_56745.t1 | 11 | 9 | LRR_4 | 376 | 412 | 2.2e-21 | 74.9 | 9.9e-06 | 0.021 | 14.4 |
| pfu_aug1.0_88198.1_56745.t1 | 10 | 7 | LRR_1 | 377 | 393 | 4.1e-11 | 41.3 | 0.0046 | 9.8 | 6.6 |
| pfu_aug1.0_88198.1_56745.t1 | 4 | 4 | LRR_5 | 399 | 481 | 2.0e-14 | 53.3 | 1.8e-05 | 0.038 | 13.6 |
| pfu_aug1.0_88198.1_56745.t1 | 8 | 8 | LRR_8 | 404 | 463 | 4.0e-37 | 125.7 | 5.1e-10 | 1.1e-06 | 28.3 |
| pfu_aug1.0_88198.1_56745.t1 | 11 | 10 | LRR_4 | 404 | 443 | 2.2e-21 | 74.9 | 2.9e-05 | 0.06 | 12.9 |
| pfu_aug1.0_88198.1_56745.t1 | 9 | 8 | LRR_6 | 426 | 441 | 8.3e-06 | 25.3 | 0.00045 | 0.96 | 9.7 |
| pfu_aug1.0_88198.1_56745.t1 | 11 | 11 | LRR_4 | 427 | 488 | 2.2e-21 | 74.9 | 0.00017 | 0.36 | 10.4 |
| pfu_aug1.0_88198.1_56745.t1 | 10 | 8 | LRR_1 | 428 | 447 | 4.1e-11 | 41.3 | 0.0011 | 2.3 | 8.5 |
| pfu_aug1.0_88198.1_56745.t1 | 10 | 9 | LRR_1 | 455 | 471 | 4.1e-11 | 41.3 | 0.87 | 1800.0 | -0.3 |
| pfu_aug1.0_88198.1_56745.t1 | 9 | 9 | LRR_6 | 477 | 489 | 8.3e-06 | 25.3 | 0.74 | 1600.0 | -0.3 |
| pfu_aug1.0_88198.1_56745.t1 | 10 | 10 | LRR_1 | 479 | 490 | 4.1e-11 | 41.3 | 0.56 | 1200.0 | 0.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_88198.1_56745.t1 | gi|344282425|ref|XP_003412974.1| | PREDICTED: leucine-rich repeat-containing protein 15 [Loxodonta africana] | 7.0e-22 |
Transcript
| Transcript ID | pfu_aug1.0_88198.1_56745.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_88198.1_56745.t1 atgctgctaggtactggaaatacaggaaaaggaagaaacatgtatatattcatcatcctagcctttaacatctatgtcat taccatacaagcaattcaaagtaacataaaatcgttgccatggaaacgattttgcgacattattggtgtagaagccaagt gttcaggacatgggaagaatctgacacaaattccacagttgcctccatttgtacaaaaactaattttagacaatgatcat tttcgtaagatcacttcagaaacgttcaatccaatcatcagaagcaaaatgaacgtaactaaactttcattcaaaaattc agttgttcactttatcggtgcgcatgctttcaagaatgtcccaagtctacaatctctgaatttggcctccaataggaagt tgaaccttacatctctgaagaattcgttttcgagtttacaaggtcagaatatttcctatcttggcttcagtgaaatggca tggacatacgagggcttatccgttggtatttttgagaatctatcttccagaaacattgatcgtttggtcctgcgaagcaa tgaaatttcacgcatacctaattcgtcacttgaaggacttcagaagttgaaaatattggatttgtcttcaaaccagatca aggattgcgaagttgagttttcaagactctacggtttagaggacttgaatctcgaacgaaatgaagtcaaatcttgtaat gtagttaacttacctaaaaatctgaaaattttacgactgggaagtaatcgtctgcttgatgtgccgttattttgttcatc aacaaaagatccatcacttccatatttagaagaattggtattgagcgataatttgatatcaatgctgacagagtcttcgt tcgaatgcatccagagcctgactcatcttgacttgtccatgaatgagattcgacattttagaccgcgtgttttcctcaat ctgttaaacttggaagatttgaaactaagaaaaatgaagcaaggagtcatacgtattgatgatggtgcattttctatgcc atccgtaaggaagttctatttcgaccaaaatttgtatgaattcgacacaataaagcgagcaagacgtgcttccttgagca actgcacgaacttagaacttcttgatttatcttggaattatatgccaaaatttcctcctgcagttagatatgttctgaac ggcttgatcaatttgaagaagctatatctcgaacgcgtttactggaacgaagttccaaaagatttattcaaaatgatgcc taatattgaagaagttgatctttcatcaaacggaataacgaatctcagcagaggtcatttcttgaacgaatcaaaaatag tccgaatgaagctgcacaacaatcggattgcgcatgtgcgttccgatacatttccggaagtgttctggaaatcaatcaaa attattgacttatcagctaatccgtttgcctgtgattgtgacctactttggttcagggatttgttacggaaatccaaaga ccaaaagatcacatttaagcgatatccgcttgattacaaatgcttgattccacaaacactgaagggcgtcaggctggcaa atttcaatatgacgtcagaagagtgtcaggaaaagtctgaattcgtagtcgccg |
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Protein
| Protein ID | pfu_aug1.0_88198.1_56745.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_88198.1_56745.t1 MLLGTGNTGKGRNMYIFIILAFNIYVITIQAIQSNIKSLPWKRFCDIIGVEAKCSGHGKNLTQIPQLPPFVQKLILDNDH FRKITSETFNPIIRSKMNVTKLSFKNSVVHFIGAHAFKNVPSLQSLNLASNRKLNLTSLKNSFSSLQGQNISYLGFSEMA WTYEGLSVGIFENLSSRNIDRLVLRSNEISRIPNSSLEGLQKLKILDLSSNQIKDCEVEFSRLYGLEDLNLERNEVKSCN VVNLPKNLKILRLGSNRLLDVPLFCSSTKDPSLPYLEELVLSDNLISMLTESSFECIQSLTHLDLSMNEIRHFRPRVFLN LLNLEDLKLRKMKQGVIRIDDGAFSMPSVRKFYFDQNLYEFDTIKRARRASLSNCTNLELLDLSWNYMPKFPPAVRYVLN GLINLKKLYLERVYWNEVPKDLFKMMPNIEEVDLSSNGITNLSRGHFLNESKIVRMKLHNNRIAHVRSDTFPEVFWKSIK IIDLSANPFACDCDLLWFRDLLRKSKDQKITFKRYPLDYKCLIPQTLKGVRLANFNMTSEECQEKSEFVVA |
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