Gene
| Gene Model ID | pfu_aug1.0_8827.1_60508 |
|---|---|
| Locus | scaffold8827.1 : 54346 ... 66671 : + |
| To GenomeBrowser | scaffold8827.1:54346..66671 |
| Genes list of scaffold | scaffold8827.1 |
| Synonym | pfu_aug2.0_2855.1_18943 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8827.1_60508.t1 | 1 | 1 | SPRY | 80 | 204 | 1.2e-06 | 28.6 | 1.3e-10 | 1.9e-06 | 27.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_8827.1_60508.t1 | gi|344277838|ref|XP_003410704.1| | PREDICTED: SPRY domain-containing SOCS box protein 2 [Loxodonta africana] | 7.0e-14 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| 8-16cell | 2 |
| egg-Dshape | 3 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 3 |
Transcript
| Transcript ID | pfu_aug1.0_8827.1_60508.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8827.1_60508.t1 atgctttttcggtttctcctcagcaaccgcgtcacagaatttaaagaaaccttacaagtagcaagtactcaagcccccga cccgccagcatggactaccgtggtagtattctgtcagaaatattacaaggacgttctagtggccaacaacaaggtgttcc gcattataaacgccaacaccatcgaactacagagtgataatcacactgtcgcagcaagatggagtcgacccatggcaaaa ggcaagcacgtgtttgaaatcgtgtatccatcgcacatgcgcagtgaatttgcatcagttggtataggaacaagaaatgc tgacttgcagatcgaaggaagtgcacttttgatcggaaaagatgaaaattcgtggggtgtggacctgaaaactcgaaagg ttatgtacgacggtgacgtcatagggaaattcccatcaggattccgtaaaaaggagcttccggatagattctttttatac cttgacttggatagcggaagtcttatgtttggatcagacgtgacgtactttggaccagccatttgtaaccttgaccttgg aggtcgaatggtgtatcttatggtatctgctaaaaactcaggatcggcgatcacagtggtgtatcgtggcagaggcgcag gactgatcgagaaactcgctcgtgctcacaactttggaacgtgtgctcatgcctttgtaactagtgctcaagtctttaaa actcgaagaaatcgtactcacgtcattcttattcgttctcacaactttgtaactcatgcttacgactgtctaactcatgg tcactttgcgactcgtgctcatgactttgtatttcatgctcatatctgtgtgacttgtactcagatcttttttactcatg cccacgcctttgtaattcaagctcacgtctttgtaactcttggtattccacaaaccttgcatcatgaaatggtttttatc caatcagcatcggacctgcccggtgtgccggtcctgtcaacttccggcgagcagattattggttataacgattctacctc aaaacgtcagccaatcccagaggccctacagaatatcacagctgtagcctag |
|
Protein
| Protein ID | pfu_aug1.0_8827.1_60508.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8827.1_60508.t1 MLFRFLLSNRVTEFKETLQVASTQAPDPPAWTTVVVFCQKYYKDVLVANNKVFRIINANTIELQSDNHTVAARWSRPMAK GKHVFEIVYPSHMRSEFASVGIGTRNADLQIEGSALLIGKDENSWGVDLKTRKVMYDGDVIGKFPSGFRKKELPDRFFLY LDLDSGSLMFGSDVTYFGPAICNLDLGGRMVYLMVSAKNSGSAITVVYRGRGAGLIEKLARAHNFGTCAHAFVTSAQVFK TRRNRTHVILIRSHNFVTHAYDCLTHGHFATRAHDFVFHAHICVTCTQIFFTHAHAFVIQAHVFVTLGIPQTLHHEMVFI QSASDLPGVPVLSTSGEQIIGYNDSTSKRQPIPEALQNITAVA |
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