Gene
| Gene Model ID | pfu_aug1.0_8832.1_24483 |
|---|---|
| Locus | scaffold8832.1 : 18308 ... 44253 : - |
| To GenomeBrowser | scaffold8832.1:18308..44253 |
| Genes list of scaffold | scaffold8832.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8832.1_24483.t1 | 2 | 1 | BRCA-2_OB3 | 348 | 399 | 8.2e-12 | 45.1 | 0.26 | 1300.0 | -1.0 |
| pfu_aug1.0_8832.1_24483.t1 | 4 | 1 | BRCA2 | 1019 | 1036 | 3.4e-12 | 45.3 | 0.0018 | 9.1 | 5.6 |
| pfu_aug1.0_8832.1_24483.t1 | 4 | 2 | BRCA2 | 1085 | 1110 | 3.4e-12 | 45.3 | 5.1e-07 | 0.0025 | 17.0 |
| pfu_aug1.0_8832.1_24483.t1 | 4 | 3 | BRCA2 | 1115 | 1136 | 3.4e-12 | 45.3 | 0.26 | 1300.0 | -1.2 |
| pfu_aug1.0_8832.1_24483.t1 | 4 | 4 | BRCA2 | 1151 | 1171 | 3.4e-12 | 45.3 | 1.1e-08 | 5.5e-05 | 22.3 |
| pfu_aug1.0_8832.1_24483.t1 | 2 | 2 | BRCA-2_OB3 | 1583 | 1717 | 8.2e-12 | 45.1 | 1.7e-14 | 8.4e-11 | 41.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_8832.1_24483.t1 | gi|297458721|ref|XP_002684324.1| | 3.0e-22 |
Transcript
| Transcript ID | pfu_aug1.0_8832.1_24483.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8832.1_24483.t1 ggactgccgagagttttgttttctcctggtccaacagtgacggaggagggagacaatgatagcatgttggacaacagtgg ccatgaattacgtgattatcacatgtcccaacatacagagagagatggcctgattatgtccccttcatcaggcagcaaag agcaagatggtgaagtgaataaactaccccaaaacaaagtgataaagcaggaatacacagagaattataacattgacagt atgcctctgttctcacaagatctactgcccagtcaaagtatgaatctatcacaactaggaaatatggacatagagaatga ccagatagtaaagatgtcagaaccgacagtcttttctgtgctgaaggaggaaattaaagcggaggtagtgagcgatacgt tatctgacttctttgatcctccgtctaaatctgtgggaaggagacgctgtgcgccgagtcgtgggaagaagaggaagtca gaggagctgagctggaatgactctgtggacaagttgtgttctactcctaaagaggcggtaacggtaaagtcgatattgtc ttgtgagaagaggaagaacagtcaggagaggacgagaaaacgtgtcagatttagtgaggacggtgacgatgtcaagctgt ttgtacgtaactcaggtacttatgacaataagcaggattcttcatcaaagttggaggagataccgacagaagatatcaat tcagatccagctgtttttataccagataaatctgaaggtattatggaaggtggtgataaacatgaaagtgttacagaaaa atatgcgagttctgaagaaaacaaattatgtactactaccaatgatgtccttaatgagtcttgtaatgtgtcggacatag atgaagaattgttttctcaggtctcaccctcggctctcaatgagatgtgttctgtagcctacacagaaactgagagtaag ctaaaggggattccagctgacgttatagctaaggatggtaacacaattggtactgaacaattaaataggggtggtcctga gagcactgtgccaaaaattacgtcactcaatagtcctgttgttgtcaagaagaaaaattgttatgatttaattgaacaga cacatgaagtaaagcatgacagcaatgatatagaggaaagtgtcgattgtgagaaaaagatagctgaaatagatataaaa gaaaatgtatctagcaatcccatgaaaaaatccctcagcttaaagcaaaaacctcggaaatttttctatccaacaaagaa acaaattaaaacttctcatcctgaatctgtgtatgagttccctaataaagttatgacagcagttcccaagcaaaatgtgg aagatcgtgttatacctgtattagatgatagaatattacacagtgagaagattgtaactgacatagacagagaaatgtgt aatggcgatggtggtagagaaatgactgaaggtgatgatgttaaagaaaacacgtcaaagtacccaggaaagattaacag taaaacaggttcactaggctttcagagattttcctccatcagagacctggagaaggagactgatgtacacaatgacttaa atcagaaaaagaagacagttgaaactttgaaccactcagactctaaacctgtgcctatagtgtcagttaatcaatattta tgtgagaacatatcgcacaataagtcagcattatctcgtaatactgaagaaaaatcagaagtgttggccaattctgtctc taatgatagaaaccagaatacagagactgtttgtcaaggaactctatgtaatactaaacttgataatacagtgaagggca aacctgaatctctggaagttagcaaagacgttatgaaatcagacagtcttccatcagaggagaaaatagacacccttcta atggaggaaatgtttgttgatgaactagaaccatctcaaagatttagcccagattctggtagacctgcaaagaaagctag atatgagacaggcaaagagcaaagcattgaagtgttagaggaaattaaaatagaaaatgaaacatgccttgaatctgagt cagtgtttaaaaaagtgcataagaaaattacaagtgaaccttcattatcatctcccttaaatcaagttactatggaaacc tcagtttcatcaacatcagatcaagtggagacaaagaacaggagcaatgctgctacgtgtgatttagtgtcatttgctgc tcagaggaaggaatccagtgactctgacttcggagaggaattttacaatgtaaatgaaattgagatgctcgaaaaacatt acataaatagcggaaaagataattgtcaaacaatattggagaatagtaaagtgaatcagatttgtaacgacacaattaaa gtggaagagaaatcactggacagcagagatgtaaaacatttagatgataaagataagtcagtcagtgaagaaggaggctt gactttaggttgcggcttcactactgcggcagggaataaggtggtagggccatcgtataaatctctggaagcagctcgta ggatgatggctgtgagtgatgaggacatagtacctatacaaaaggaggtgtctgatgatgtgtctggcaagggtaatact cagaaacaagtggaattactcgaggaactcacaaagccattctcacaggttatggaggaagacatatgtgaagatatagt taacaatgaggatggttcaagtgaaaactcccagagtgagggatgtgtatcaaaaacagatcagaatgtacagaacaagg gagaaggtattgagaaagaagtaacatgcagagattgtgttgaactgaaggatgctgactctggatctgaaatgaaaatt aacactgatacagtgacagtgaatgaattatgtatctatgataaaagtgataaggaatcttatgtttggagtgacgatgt accaggacaggacattcaaagtgctgtaaaagtaaaaccgtccagtgatacaggtacatgtacaataaacggaggaatga taaattcaccagttcatagtgcatctggtaaagctatcagtataagtgcaaccacaattaaagctgcaagagacaagatg ggtgatactgacttaacttctcaaaatttgaatcttaaaaatacgtctgaaaatagtggtgatgcatctgtaacctcttc tgatcctgaaaggaaatcaacagaaagtgagaaggaaacaatacaatgtccatttcaaagtgcatctgggaaaattatca cagtcagtgcagatgcactacaggctgccaggaatacattcaatgatgatcaacactctgtcagtttattttcaagtgca tcaggagatatgattcatgaaagtacagattcactattaaaagctagagacacttcaacaaatgatcaggaatttactgt gaatacaccatttcagagtgcatctggcaagaaaattaacataagtgaaagtgcactcaaagcggctaggcaaactttag agagttatcaggaattaggctatgaattcaccatttcagagtgcatctggcaagaaaatcgacactagggaggttctaca ggtgattctttgaggtctttactggaagtaagcactgttaatcccggaaactcttcgtttaagacaccatacaaaaccat gacatcctccgtgaaatcctccgtgcccaacaccacaccacagactactgatgtaaaacctaaaactccggtgtttggtg taaagtcaggacatgtgtctgtctgtaaggatgagtctgtgtccgtctgtaacaccaaggataactcgtgtaacgtacta ccagtctgcaatgacaagatgtactctaagcttgagagctgtacaggagatactgcagaacggagagtgatcgacaagaa tacaagcgaaagccgtcatgagaagatagatgtacaagccttgtgtgaagccaggaagaaacagtctgacatgatagagg caaggtcaaaggtcaaggtcaaacctgtagagggtattctgtataagatgaagtctagtaatgggagatacaagctgaga gatttgtttgacataactcgcattggctctaagaaattacagatgccatcaggactggagtctgctctgggtgtaacagc agggaaccctgccaagttcacattcagactggcagattattatggtgttaacctcacacatgtctatcttggagatggag catttgtcgtaccagatgacagaggaaatgtgagccatacagaactctaccaatcagctataaagaaggtaacagagaga gacgacaccccaggtaaaagaatggtactgttggtgtcgggaattagtaaccatggaaacaataaaaccgaatctactgt ctcagcatcaaatctggattcgaagaatgttaagaggaatgtggtacctctgttaaaactcagagttcttggctgctcaa ggaaggatctggacaccaaaatatctatgttgataacagtgtggagacctgatcaggggatggagcatctcaaagagggt acacgatacagagtgtatggactaacggctagtacagccaggagtagatacacagagagccctgtccagctgaccctggc cagacacggcagatttcaggccttatcattggatgagaacatcctggacatggtatacgaacctcgacgaccactgtgtg tggctgacctgagattagggacagcaccgtacggggaggcagatatcatagggatggtgattaatatagatcatacacag ttcacagaaagtggaaagatccaggatatagtgtattgtgtcgattgtaacagagatgtttttggtgtcaaattttgggg tggaaacaaggctgttatgagtggtgacaccctggcacccgggaggatagtatgcttcagtaaccttatagacagacctt cttaccgatcctctatcctacctgtcctggagtggagctctgaactgtcactgtgtacacagactcctcagggggcaggg cagaggggcgtggtcacagagatacaggggatgatgaagggtgctggtgggtgtgggacattcctggaggagtgtaggag gatcctagaggagctgttacagaggaaagaggaggctaaacaaccagctgttactccacaggtaaacaaacattatatga caaataaccagctcaataggtaa |
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Protein
| Protein ID | pfu_aug1.0_8832.1_24483.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8832.1_24483.t1 GLPRVLFSPGPTVTEEGDNDSMLDNSGHELRDYHMSQHTERDGLIMSPSSGSKEQDGEVNKLPQNKVIKQEYTENYNIDS MPLFSQDLLPSQSMNLSQLGNMDIENDQIVKMSEPTVFSVLKEEIKAEVVSDTLSDFFDPPSKSVGRRRCAPSRGKKRKS EELSWNDSVDKLCSTPKEAVTVKSILSCEKRKNSQERTRKRVRFSEDGDDVKLFVRNSGTYDNKQDSSSKLEEIPTEDIN SDPAVFIPDKSEGIMEGGDKHESVTEKYASSEENKLCTTTNDVLNESCNVSDIDEELFSQVSPSALNEMCSVAYTETESK LKGIPADVIAKDGNTIGTEQLNRGGPESTVPKITSLNSPVVVKKKNCYDLIEQTHEVKHDSNDIEESVDCEKKIAEIDIK ENVSSNPMKKSLSLKQKPRKFFYPTKKQIKTSHPESVYEFPNKVMTAVPKQNVEDRVIPVLDDRILHSEKIVTDIDREMC NGDGGREMTEGDDVKENTSKYPGKINSKTGSLGFQRFSSIRDLEKETDVHNDLNQKKKTVETLNHSDSKPVPIVSVNQYL CENISHNKSALSRNTEEKSEVLANSVSNDRNQNTETVCQGTLCNTKLDNTVKGKPESLEVSKDVMKSDSLPSEEKIDTLL MEEMFVDELEPSQRFSPDSGRPAKKARYETGKEQSIEVLEEIKIENETCLESESVFKKVHKKITSEPSLSSPLNQVTMET SVSSTSDQVETKNRSNAATCDLVSFAAQRKESSDSDFGEEFYNVNEIEMLEKHYINSGKDNCQTILENSKVNQICNDTIK VEEKSLDSRDVKHLDDKDKSVSEEGGLTLGCGFTTAAGNKVVGPSYKSLEAARRMMAVSDEDIVPIQKEVSDDVSGKGNT QKQVELLEELTKPFSQVMEEDICEDIVNNEDGSSENSQSEGCVSKTDQNVQNKGEGIEKEVTCRDCVELKDADSGSEMKI NTDTVTVNELCIYDKSDKESYVWSDDVPGQDIQSAVKVKPSSDTGTCTINGGMINSPVHSASGKAISISATTIKAARDKM GDTDLTSQNLNLKNTSENSGDASVTSSDPERKSTESEKETIQCPFQSASGKIITVSADALQAARNTFNDDQHSVSLFSSA SGDMIHESTDSLLKARDTSTNDQEFTVNTPFQSASGKKINISESALKAARQTLESYQELGYEFTISECIWQENRHXGGST GDSLRSLLEVSTVNPGNSSFKTPYKTMTSSVKSSVPNTTPQTTDVKPKTPVFGVKSGHVSVCKDESVSVCNTKDNSCNVL PVCNDKMYSKLESCTGDTAERRVIDKNTSESRHEKIDVQALCEARKKQSDMIEARSKVKVKPVEGILYKMKSSNGRYKLR DLFDITRIGSKKLQMPSGLESALGVTAGNPAKFTFRLADYYGVNLTHVYLGDGAFVVPDDRGNVSHTELYQSAIKKVTER DDTPGKRMVLLVSGISNHGNNKTESTVSASNLDSKNVKRNVVPLLKLRVLGCSRKDLDTKISMLITVWRPDQGMEHLKEG TRYRVYGLTASTARSRYTESPVQLTLARHGRFQALSLDENILDMVYEPRRPLCVADLRLGTAPYGEADIIGMVINIDHTQ FTESGKIQDIVYCVDCNRDVFGVKFWGGNKAVMSGDTLAPGRIVCFSNLIDRPSYRSSILPVLEWSSELSLCTQTPQGAG QRGVVTEIQGMMKGAGGCGTFLEECRRILEELLQRKEEAKQPAVTPQVNKHYMTNNQLNR |
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